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Structure learning in Nested Effects Models.
Tresch A, Markowetz F. Tresch A, et al. Stat Appl Genet Mol Biol. 2008;7(1):Article9. doi: 10.2202/1544-6115.1332. Epub 2008 Mar 1. Stat Appl Genet Mol Biol. 2008. PMID: 18312214
Learning monotonic genotype-phenotype maps.
Beerenwinkel N, Knupfer P, Tresch A. Beerenwinkel N, et al. Among authors: tresch a. Stat Appl Genet Mol Biol. 2011;10:Article 3. doi: 10.2202/1544-6115.1603. Epub 2011 Jan 6. Stat Appl Genet Mol Biol. 2011. PMID: 21291413
Quantitative methylation analysis of developmentally important genes in human pregnancy losses after ART and spontaneous conception.
Zechner U, Pliushch G, Schneider E, El Hajj N, Tresch A, Shufaro Y, Seidmann L, Coerdt W, Müller AM, Haaf T. Zechner U, et al. Among authors: tresch a. Mol Hum Reprod. 2010 Sep;16(9):704-13. doi: 10.1093/molehr/gap107. Epub 2009 Dec 9. Mol Hum Reprod. 2010. PMID: 20007506
A Bayesian network view on nested effects models.
Zeller C, Fröhlich H, Tresch A. Zeller C, et al. Among authors: tresch a. EURASIP J Bioinform Syst Biol. 2009;2009(1):195272. doi: 10.1155/2009/195272. Epub 2009 Jan 8. EURASIP J Bioinform Syst Biol. 2009. PMID: 19148294 Free PMC article.
Multiplex rt-PCR expression analysis of developmentally important genes in individual mouse preimplantation embryos and blastomeres.
May A, Kirchner R, Müller H, Hartmann P, El Hajj N, Tresch A, Zechner U, Mann W, Haaf T. May A, et al. Among authors: tresch a. Biol Reprod. 2009 Jan;80(1):194-202. doi: 10.1095/biolreprod.107.064691. Epub 2008 Sep 10. Biol Reprod. 2009. PMID: 18784354
Discrimination of direct and indirect interactions in a network of regulatory effects.
Tresch A, Beissbarth T, Sültmann H, Kuner R, Poustka A, Buness A. Tresch A, et al. J Comput Biol. 2007 Nov;14(9):1217-28. doi: 10.1089/cmb.2007.0085. J Comput Biol. 2007. PMID: 17990974
Cell viability, osteoblast differentiation, and gene expression are altered in human osteoblasts from hypertrophic fracture non-unions.
Hofmann A, Ritz U, Hessmann MH, Schmid C, Tresch A, Rompe JD, Meurer A, Rommens PM. Hofmann A, et al. Among authors: tresch a. Bone. 2008 May;42(5):894-906. doi: 10.1016/j.bone.2008.01.013. Epub 2008 Feb 9. Bone. 2008. PMID: 18314404
Unsupervised automated high throughput phenotyping of RNAi time-lapse movies.
Failmezger H, Fröhlich H, Tresch A. Failmezger H, et al. Among authors: tresch a. BMC Bioinformatics. 2013 Oct 4;14:292. doi: 10.1186/1471-2105-14-292. BMC Bioinformatics. 2013. PMID: 24090185 Free PMC article.
The functional cancer map: a systems-level synopsis of genetic deregulation in cancer.
Krupp M, Maass T, Marquardt JU, Staib F, Bauer T, König R, Biesterfeld S, Galle PR, Tresch A, Teufel A. Krupp M, et al. Among authors: tresch a. BMC Med Genomics. 2011 Jun 30;4:53. doi: 10.1186/1755-8794-4-53. BMC Med Genomics. 2011. PMID: 21718500 Free PMC article.
Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle.
Zacher B, Lidschreiber M, Cramer P, Gagneur J, Tresch A. Zacher B, et al. Among authors: tresch a. Mol Syst Biol. 2014 Dec 19;10(12):768. doi: 10.15252/msb.20145654. Mol Syst Biol. 2014. PMID: 25527639 Free PMC article.
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