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Confetti: a multiprotease map of the HeLa proteome for comprehensive proteomics.
Guo X, Trudgian DC, Lemoff A, Yadavalli S, Mirzaei H. Guo X, et al. Among authors: trudgian dc. Mol Cell Proteomics. 2014 Jun;13(6):1573-84. doi: 10.1074/mcp.M113.035170. Epub 2014 Apr 2. Mol Cell Proteomics. 2014. PMID: 24696503 Free PMC article.
GOAT--a simple LC-MS/MS gradient optimization tool.
Trudgian DC, Fischer R, Guo X, Kessler BM, Mirzaei H. Trudgian DC, et al. Proteomics. 2014 Jun;14(12):1467-71. doi: 10.1002/pmic.201300524. Epub 2014 May 15. Proteomics. 2014. PMID: 24723505 Free PMC article.
ProteoSign: an end-user online differential proteomics statistical analysis platform.
Efstathiou G, Antonakis AN, Pavlopoulos GA, Theodosiou T, Divanach P, Trudgian DC, Thomas B, Papanikolaou N, Aivaliotis M, Acuto O, Iliopoulos I. Efstathiou G, et al. Among authors: trudgian dc. Nucleic Acids Res. 2017 Jul 3;45(W1):W300-W306. doi: 10.1093/nar/gkx444. Nucleic Acids Res. 2017. PMID: 28520987 Free PMC article.
CPFP: a central proteomics facilities pipeline.
Trudgian DC, Thomas B, McGowan SJ, Kessler BM, Salek M, Acuto O. Trudgian DC, et al. Bioinformatics. 2010 Apr 15;26(8):1131-2. doi: 10.1093/bioinformatics/btq081. Epub 2010 Feb 25. Bioinformatics. 2010. PMID: 20189941
Fucosylation and protein glycosylation create functional receptors for cholera toxin.
Wands AM, Fujita A, McCombs JE, Cervin J, Dedic B, Rodriguez AC, Nischan N, Bond MR, Mettlen M, Trudgian DC, Lemoff A, Quiding-Järbrink M, Gustavsson B, Steentoft C, Clausen H, Mirzaei H, Teneberg S, Yrlid U, Kohler JJ. Wands AM, et al. Among authors: trudgian dc. Elife. 2015 Oct 29;4:e09545. doi: 10.7554/eLife.09545. Elife. 2015. PMID: 26512888 Free PMC article.
A method for large-scale identification of protein arginine methylation.
Uhlmann T, Geoghegan VL, Thomas B, Ridlova G, Trudgian DC, Acuto O. Uhlmann T, et al. Mol Cell Proteomics. 2012 Nov;11(11):1489-99. doi: 10.1074/mcp.M112.020743. Epub 2012 Aug 3. Mol Cell Proteomics. 2012. PMID: 22865923 Free PMC article.
Comparative evaluation of label-free SINQ normalized spectral index quantitation in the central proteomics facilities pipeline.
Trudgian DC, Ridlova G, Fischer R, Mackeen MM, Ternette N, Acuto O, Kessler BM, Thomas B. Trudgian DC, et al. Proteomics. 2011 Jul;11(14):2790-7. doi: 10.1002/pmic.201000800. Epub 2011 Jun 8. Proteomics. 2011. PMID: 21656681
Optimal translational termination requires C4 lysyl hydroxylation of eRF1.
Feng T, Yamamoto A, Wilkins SE, Sokolova E, Yates LA, Münzel M, Singh P, Hopkinson RJ, Fischer R, Cockman ME, Shelley J, Trudgian DC, Schödel J, McCullagh JS, Ge W, Kessler BM, Gilbert RJ, Frolova LY, Alkalaeva E, Ratcliffe PJ, Schofield CJ, Coleman ML. Feng T, et al. Among authors: trudgian dc. Mol Cell. 2014 Feb 20;53(4):645-54. doi: 10.1016/j.molcel.2013.12.028. Epub 2014 Jan 30. Mol Cell. 2014. PMID: 24486019 Free PMC article.
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