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Challenges in the analysis of mass-throughput data: a technical commentary from the statistical machine learning perspective.
Aliferis CF, Statnikov A, Tsamardinos I. Aliferis CF, et al. Among authors: tsamardinos i. Cancer Inform. 2007 Feb 16;2:133-62. Cancer Inform. 2007. PMID: 19458765 Free PMC article.
A novel algorithm for scalable and accurate Bayesian network learning.
Brown LE, Tsamardinos I, Aliferis CF. Brown LE, et al. Among authors: tsamardinos i. Stud Health Technol Inform. 2004;107(Pt 1):711-5. Stud Health Technol Inform. 2004. PMID: 15360905
Methods for multi-category cancer diagnosis from gene expression data: a comprehensive evaluation to inform decision support system development.
Statnikov A, Aliferis CF, Tsamardinos I. Statnikov A, et al. Among authors: tsamardinos i. Stud Health Technol Inform. 2004;107(Pt 2):813-7. Stud Health Technol Inform. 2004. PMID: 15360925
A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis.
Statnikov A, Aliferis CF, Tsamardinos I, Hardin D, Levy S. Statnikov A, et al. Among authors: tsamardinos i. Bioinformatics. 2005 Mar 1;21(5):631-43. doi: 10.1093/bioinformatics/bti033. Epub 2004 Sep 16. Bioinformatics. 2005. PMID: 15374862
Text categorization models for high-quality article retrieval in internal medicine.
Aphinyanaphongs Y, Tsamardinos I, Statnikov A, Hardin D, Aliferis CF. Aphinyanaphongs Y, et al. Among authors: tsamardinos i. J Am Med Inform Assoc. 2005 Mar-Apr;12(2):207-16. doi: 10.1197/jamia.M1641. Epub 2004 Nov 23. J Am Med Inform Assoc. 2005. PMID: 15561789 Free PMC article.
GEMS: a system for automated cancer diagnosis and biomarker discovery from microarray gene expression data.
Statnikov A, Tsamardinos I, Dosbayev Y, Aliferis CF. Statnikov A, et al. Among authors: tsamardinos i. Int J Med Inform. 2005 Aug;74(7-8):491-503. doi: 10.1016/j.ijmedinf.2005.05.002. Int J Med Inform. 2005. PMID: 15967710
A comparison of Bayesian network learning algorithms from continuous data.
Fu LD, Tsamardinos I. Fu LD, et al. Among authors: tsamardinos i. AMIA Annu Symp Proc. 2005;2005:960. AMIA Annu Symp Proc. 2005. PMID: 16779247 Free PMC article.
Factors influencing the statistical power of complex data analysis protocols for molecular signature development from microarray data.
Aliferis CF, Statnikov A, Tsamardinos I, Schildcrout JS, Shepherd BE, Harrell FE Jr. Aliferis CF, et al. Among authors: tsamardinos i. PLoS One. 2009;4(3):e4922. doi: 10.1371/journal.pone.0004922. Epub 2009 Mar 17. PLoS One. 2009. PMID: 19290050 Free PMC article.
METHODOLOGY/PRINCIPAL FINDINGS: We show that choices of specific components of the analysis (i.e., error metric, classifier, error estimator and event balancing) have large and compounding effects on statistical power. ...
METHODOLOGY/PRINCIPAL FINDINGS: We show that choices of specific components of the analysis (i.e., error metric, classifier, error es …
Structure-based variable selection for survival data.
Lagani V, Tsamardinos I. Lagani V, et al. Among authors: tsamardinos i. Bioinformatics. 2010 Aug 1;26(15):1887-94. doi: 10.1093/bioinformatics/btq261. Epub 2010 Jun 2. Bioinformatics. 2010. PMID: 20519286
HITON: a novel Markov Blanket algorithm for optimal variable selection.
Aliferis CF, Tsamardinos I, Statnikov A. Aliferis CF, et al. Among authors: tsamardinos i. AMIA Annu Symp Proc. 2003;2003:21-5. AMIA Annu Symp Proc. 2003. PMID: 14728126 Free PMC article.
Namely, (i) bioactivity prediction for drug discovery, (ii) clinical diagnosis of arrhythmias, (iii) bibliographic text categorization, (iv) lung cancer diagnosis from gene expression array data, and (v) proteomics-based prostate cancer detection. ...
Namely, (i) bioactivity prediction for drug discovery, (ii) clinical diagnosis of arrhythmias, (iii) bibliographic text categorizatio …
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