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16 results
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HMMpTM: improving transmembrane protein topology prediction using phosphorylation and glycosylation site prediction.
Tsaousis GN, Bagos PG, Hamodrakas SJ. Tsaousis GN, et al. Biochim Biophys Acta. 2014 Feb;1844(2):316-22. doi: 10.1016/j.bbapap.2013.11.001. Epub 2013 Nov 10. Biochim Biophys Acta. 2014. PMID: 24225132
How many 3D structures do we need to train a predictor?
Bagos PG, Tsaousis GN, Hamodrakas SJ. Bagos PG, et al. Among authors: tsaousis gn. Genomics Proteomics Bioinformatics. 2009 Sep;7(3):128-37. doi: 10.1016/S1672-0229(08)60041-8. Genomics Proteomics Bioinformatics. 2009. PMID: 19944385 Free PMC article.
ExTopoDB: a database of experimentally derived topological models of transmembrane proteins.
Tsaousis GN, Tsirigos KD, Andrianou XD, Liakopoulos TD, Bagos PG, Hamodrakas SJ. Tsaousis GN, et al. Bioinformatics. 2010 Oct 1;26(19):2490-2. doi: 10.1093/bioinformatics/btq362. Epub 2010 Jul 3. Bioinformatics. 2010. PMID: 20601677
Analysis of Molecular Recognition Features (MoRFs) in membrane proteins.
Kotta-Loizou I, Tsaousis GN, Hamodrakas SJ. Kotta-Loizou I, et al. Among authors: tsaousis gn. Biochim Biophys Acta. 2013 Apr;1834(4):798-807. doi: 10.1016/j.bbapap.2013.01.006. Epub 2013 Jan 15. Biochim Biophys Acta. 2013. PMID: 23328413
mpMoRFsDB: a database of molecular recognition features in membrane proteins.
Gypas F, Tsaousis GN, Hamodrakas SJ. Gypas F, et al. Among authors: tsaousis gn. Bioinformatics. 2013 Oct 1;29(19):2517-8. doi: 10.1093/bioinformatics/btt427. Epub 2013 Jul 26. Bioinformatics. 2013. PMID: 23894139
The human plasma membrane peripherome: visualization and analysis of interactions.
Nastou KC, Tsaousis GN, Kremizas KE, Litou ZI, Hamodrakas SJ. Nastou KC, et al. Among authors: tsaousis gn. Biomed Res Int. 2014;2014:397145. doi: 10.1155/2014/397145. Epub 2014 Jun 25. Biomed Res Int. 2014. PMID: 25057483 Free PMC article.
MBPpred: Proteome-wide detection of membrane lipid-binding proteins using profile Hidden Markov Models.
Nastou KC, Tsaousis GN, Papandreou NC, Hamodrakas SJ. Nastou KC, et al. Among authors: tsaousis gn. Biochim Biophys Acta. 2016 Jul;1864(7):747-54. doi: 10.1016/j.bbapap.2016.03.015. Epub 2016 Apr 9. Biochim Biophys Acta. 2016. PMID: 27048983
Predicting Beta Barrel Transmembrane Proteins Using HMMs.
Tsaousis GN, Hamodrakas SJ, Bagos PG. Tsaousis GN, et al. Methods Mol Biol. 2017;1552:43-61. doi: 10.1007/978-1-4939-6753-7_4. Methods Mol Biol. 2017. PMID: 28224490
Predicting Alpha Helical Transmembrane Proteins Using HMMs.
Tsaousis GN, Theodoropoulou MC, Hamodrakas SJ, Bagos PG. Tsaousis GN, et al. Methods Mol Biol. 2017;1552:63-82. doi: 10.1007/978-1-4939-6753-7_5. Methods Mol Biol. 2017. PMID: 28224491
JUCHMME: a Java Utility for Class Hidden Markov Models and Extensions for biological sequence analysis.
Tamposis IA, Tsirigos KD, Theodoropoulou MC, Kontou PI, Tsaousis GN, Sarantopoulou D, Litou ZI, Bagos PG. Tamposis IA, et al. Among authors: tsaousis gn. Bioinformatics. 2019 Dec 15;35(24):5309-5312. doi: 10.1093/bioinformatics/btz533. Bioinformatics. 2019. PMID: 31250907
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