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SABBAC: online Structural Alphabet-based protein BackBone reconstruction from Alpha-Carbon trace.
Maupetit J, Gautier R, Tufféry P. Maupetit J, et al. Among authors: tuffery p. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W147-51. doi: 10.1093/nar/gkl289. Nucleic Acids Res. 2006. PMID: 16844979 Free PMC article.
FORME: an interactive package for protein backbone deformation.
Tuffery P, Vaney MC, Mornon JP, Hazout S. Tuffery P, et al. J Mol Graph. 1991 Sep;9(3):175-81, 165. doi: 10.1016/0263-7855(91)80006-l. J Mol Graph. 1991. PMID: 1772840
XmMol: an X11 and motif program for macromolecular visualization and modeling.
Tufféry P. Tufféry P. J Mol Graph. 1995 Feb;13(1):67-72, 62. doi: 10.1016/0263-7855(94)00011-g. J Mol Graph. 1995. PMID: 7794836
Prediction of protein side chain conformations: a study on the influence of backbone accuracy on conformation stability in the rotamer space.
Tufféry P, Etchebest C, Hazout S. Tufféry P, et al. Protein Eng. 1997 Apr;10(4):361-72. doi: 10.1093/protein/10.4.361. Protein Eng. 1997. PMID: 9194160
PredAcc: prediction of solvent accessibility.
Mucchielli-Giorgi MH, Hazout S, Tufféry P. Mucchielli-Giorgi MH, et al. Among authors: tuffery p. Bioinformatics. 1999 Feb;15(2):176-7. doi: 10.1093/bioinformatics/15.2.176. Bioinformatics. 1999. PMID: 10089205
Hidden Markov model approach for identifying the modular framework of the protein backbone.
Camproux AC, Tuffery P, Chevrolat JP, Boisvieux JF, Hazout S. Camproux AC, et al. Among authors: tuffery p. Protein Eng. 1999 Dec;12(12):1063-73. doi: 10.1093/protein/12.12.1063. Protein Eng. 1999. PMID: 10611400
CS-PSeq-Gen: simulating the evolution of protein sequence under constraints.
Tufféry P. Tufféry P. Bioinformatics. 2002 Jul;18(7):1015-6. doi: 10.1093/bioinformatics/18.7.1015. Bioinformatics. 2002. PMID: 12117802
Critical assessment of side-chain conformational space sampling procedures designed for quantifying the effect of side-chain environment.
Gautier R, Tufféry P. Gautier R, et al. Among authors: tuffery p. J Comput Chem. 2003 Nov 30;24(15):1950-61. doi: 10.1002/jcc.10334. J Comput Chem. 2003. PMID: 14515377
A hidden markov model derived structural alphabet for proteins.
Camproux AC, Gautier R, Tufféry P. Camproux AC, et al. Among authors: tuffery p. J Mol Biol. 2004 Jun 4;339(3):591-605. doi: 10.1016/j.jmb.2004.04.005. J Mol Biol. 2004. PMID: 15147844
SCit: web tools for protein side chain conformation analysis.
Gautier R, Camproux AC, Tufféry P. Gautier R, et al. Among authors: tuffery p. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W508-11. doi: 10.1093/nar/gkh388. Nucleic Acids Res. 2004. PMID: 15215438 Free PMC article.
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