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84 results
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Detecting protein candidate fragments using a structural alphabet profile comparison approach.
Shen Y, Picord G, Guyon F, Tuffery P. Shen Y, et al. Among authors: tuffery p. PLoS One. 2013 Nov 26;8(11):e80493. doi: 10.1371/journal.pone.0080493. eCollection 2013. PLoS One. 2013. PMID: 24303019 Free PMC article.
A new approach to the rapid determination of protein side chain conformations.
Tuffery P, Etchebest C, Hazout S, Lavery R. Tuffery P, et al. J Biomol Struct Dyn. 1991 Jun;8(6):1267-89. doi: 10.1080/07391102.1991.10507882. J Biomol Struct Dyn. 1991. PMID: 1892586
Packing and recognition of protein structural elements: a new approach applied to the 4-helix bundle of myohemerythrin.
Tufféry P, Lavery R. Tufféry P, et al. Proteins. 1993 Apr;15(4):413-25. doi: 10.1002/prot.340150408. Proteins. 1993. PMID: 8460111
Prediction of protein side chain conformations: a study on the influence of backbone accuracy on conformation stability in the rotamer space.
Tufféry P, Etchebest C, Hazout S. Tufféry P, et al. Protein Eng. 1997 Apr;10(4):361-72. doi: 10.1093/protein/10.4.361. Protein Eng. 1997. PMID: 9194160
PredAcc: prediction of solvent accessibility.
Mucchielli-Giorgi MH, Hazout S, Tufféry P. Mucchielli-Giorgi MH, et al. Among authors: tuffery p. Bioinformatics. 1999 Feb;15(2):176-7. doi: 10.1093/bioinformatics/15.2.176. Bioinformatics. 1999. PMID: 10089205
Hidden Markov model approach for identifying the modular framework of the protein backbone.
Camproux AC, Tuffery P, Chevrolat JP, Boisvieux JF, Hazout S. Camproux AC, et al. Among authors: tuffery p. Protein Eng. 1999 Dec;12(12):1063-73. doi: 10.1093/protein/12.12.1063. Protein Eng. 1999. PMID: 10611400
CS-PSeq-Gen: simulating the evolution of protein sequence under constraints.
Tufféry P. Tufféry P. Bioinformatics. 2002 Jul;18(7):1015-6. doi: 10.1093/bioinformatics/18.7.1015. Bioinformatics. 2002. PMID: 12117802
Critical assessment of side-chain conformational space sampling procedures designed for quantifying the effect of side-chain environment.
Gautier R, Tufféry P. Gautier R, et al. Among authors: tuffery p. J Comput Chem. 2003 Nov 30;24(15):1950-61. doi: 10.1002/jcc.10334. J Comput Chem. 2003. PMID: 14515377
A hidden markov model derived structural alphabet for proteins.
Camproux AC, Gautier R, Tufféry P. Camproux AC, et al. Among authors: tuffery p. J Mol Biol. 2004 Jun 4;339(3):591-605. doi: 10.1016/j.jmb.2004.04.005. J Mol Biol. 2004. PMID: 15147844
SCit: web tools for protein side chain conformation analysis.
Gautier R, Camproux AC, Tufféry P. Gautier R, et al. Among authors: tuffery p. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W508-11. doi: 10.1093/nar/gkh388. Nucleic Acids Res. 2004. PMID: 15215438 Free PMC article.
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