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RNA Secondary Structure Prediction.
Mathews DH, Turner DH, Watson RM. Mathews DH, et al. Among authors: turner dh. Curr Protoc Nucleic Acid Chem. 2016 Dec 1;67:11.2.1-11.2.19. doi: 10.1002/cpnc.19. Curr Protoc Nucleic Acid Chem. 2016. PMID: 27911493
In vivo analysis of influenza A mRNA secondary structures identifies critical regulatory motifs.
Simon LM, Morandi E, Luganini A, Gribaudo G, Martinez-Sobrido L, Turner DH, Oliviero S, Incarnato D. Simon LM, et al. Among authors: turner dh. Nucleic Acids Res. 2019 Jul 26;47(13):7003-7017. doi: 10.1093/nar/gkz318. Nucleic Acids Res. 2019. PMID: 31053845 Free PMC article.
Improving RNA nearest neighbor parameters for helices by going beyond the two-state model.
Spasic A, Berger KD, Chen JL, Seetin MG, Turner DH, Mathews DH. Spasic A, et al. Among authors: turner dh. Nucleic Acids Res. 2018 Jun 1;46(10):4883-4892. doi: 10.1093/nar/gky270. Nucleic Acids Res. 2018. PMID: 29718397 Free PMC article.
Crystal structure of a poly(rA) staggered zipper at acidic pH: evidence that adenine N1 protonation mediates parallel double helix formation.
Gleghorn ML, Zhao J, Turner DH, Maquat LE. Gleghorn ML, et al. Among authors: turner dh. Nucleic Acids Res. 2016 Sep 30;44(17):8417-24. doi: 10.1093/nar/gkw526. Epub 2016 Jun 10. Nucleic Acids Res. 2016. PMID: 27288442 Free PMC article.
RNA Secondary Structure Determination by NMR.
Chen JL, Bellaousov S, Turner DH. Chen JL, et al. Among authors: turner dh. Methods Mol Biol. 2016;1490:177-86. doi: 10.1007/978-1-4939-6433-8_11. Methods Mol Biol. 2016. PMID: 27665599
Molecular dynamics correctly models the unusual major conformation of the GAGU RNA internal loop and with NMR reveals an unusual minor conformation.
Spasic A, Kennedy SD, Needham L, Manoharan M, Kierzek R, Turner DH, Mathews DH. Spasic A, et al. Among authors: turner dh. RNA. 2018 May;24(5):656-672. doi: 10.1261/rna.064527.117. Epub 2018 Feb 6. RNA. 2018. PMID: 29434035 Free PMC article.
Nuclear Magnetic Resonance-Assisted Prediction of Secondary Structure for RNA: Incorporation of Direction-Dependent Chemical Shift Constraints.
Chen JL, Bellaousov S, Tubbs JD, Kennedy SD, Lopez MJ, Mathews DH, Turner DH. Chen JL, et al. Among authors: turner dh. Biochemistry. 2015 Nov 17;54(45):6769-82. doi: 10.1021/acs.biochem.5b00833. Epub 2015 Nov 3. Biochemistry. 2015. PMID: 26451676 Free PMC article.
Structural features of a 3' splice site in influenza a.
Chen JL, Kennedy SD, Turner DH. Chen JL, et al. Among authors: turner dh. Biochemistry. 2015 Jun 2;54(21):3269-85. doi: 10.1021/acs.biochem.5b00012. Epub 2015 May 21. Biochemistry. 2015. PMID: 25909229 Free PMC article.
Secondary structure of a conserved domain in an intron of influenza A M1 mRNA.
Jiang T, Kennedy SD, Moss WN, Kierzek E, Turner DH. Jiang T, et al. Among authors: turner dh. Biochemistry. 2014 Aug 19;53(32):5236-48. doi: 10.1021/bi500611j. Epub 2014 Aug 6. Biochemistry. 2014. PMID: 25026548 Free PMC article.
The contribution of pseudouridine to stabilities and structure of RNAs.
Kierzek E, Malgowska M, Lisowiec J, Turner DH, Gdaniec Z, Kierzek R. Kierzek E, et al. Among authors: turner dh. Nucleic Acids Res. 2014 Mar;42(5):3492-501. doi: 10.1093/nar/gkt1330. Epub 2013 Dec 24. Nucleic Acids Res. 2014. PMID: 24369424 Free PMC article.
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