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18 results
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The MaxQuant computational platform for mass spectrometry-based shotgun proteomics.
Tyanova S, Temu T, Cox J. Tyanova S, et al. Nat Protoc. 2016 Dec;11(12):2301-2319. doi: 10.1038/nprot.2016.136. Epub 2016 Oct 27. Nat Protoc. 2016. PMID: 27809316
MaxQuant for in-depth analysis of large SILAC datasets.
Tyanova S, Mann M, Cox J. Tyanova S, et al. Methods Mol Biol. 2014;1188:351-64. doi: 10.1007/978-1-4939-1142-4_24. Methods Mol Biol. 2014. PMID: 25059623
Ultradeep human phosphoproteome reveals a distinct regulatory nature of Tyr and Ser/Thr-based signaling.
Sharma K, D'Souza RC, Tyanova S, Schaab C, Wiśniewski JR, Cox J, Mann M. Sharma K, et al. Among authors: tyanova s. Cell Rep. 2014 Sep 11;8(5):1583-94. doi: 10.1016/j.celrep.2014.07.036. Epub 2014 Aug 21. Cell Rep. 2014. PMID: 25159151
Visualization of LC-MS/MS proteomics data in MaxQuant.
Tyanova S, Temu T, Carlson A, Sinitcyn P, Mann M, Cox J. Tyanova S, et al. Proteomics. 2015 Apr;15(8):1453-6. doi: 10.1002/pmic.201400449. Epub 2015 Mar 5. Proteomics. 2015. PMID: 25644178 Free PMC article.
Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles.
Deeb SJ, Tyanova S, Hummel M, Schmidt-Supprian M, Cox J, Mann M. Deeb SJ, et al. Among authors: tyanova s. Mol Cell Proteomics. 2015 Nov;14(11):2947-60. doi: 10.1074/mcp.M115.050245. Epub 2015 Aug 26. Mol Cell Proteomics. 2015. PMID: 26311899 Free PMC article.
Cell type- and brain region-resolved mouse brain proteome.
Sharma K, Schmitt S, Bergner CG, Tyanova S, Kannaiyan N, Manrique-Hoyos N, Kongi K, Cantuti L, Hanisch UK, Philips MA, Rossner MJ, Mann M, Simons M. Sharma K, et al. Among authors: tyanova s. Nat Neurosci. 2015 Dec;18(12):1819-31. doi: 10.1038/nn.4160. Epub 2015 Nov 2. Nat Neurosci. 2015. PMID: 26523646
The Proteome of Primary Prostate Cancer.
Iglesias-Gato D, Wikström P, Tyanova S, Lavallee C, Thysell E, Carlsson J, Hägglöf C, Cox J, Andrén O, Stattin P, Egevad L, Widmark A, Bjartell A, Collins CC, Bergh A, Geiger T, Mann M, Flores-Morales A. Iglesias-Gato D, et al. Among authors: tyanova s. Eur Urol. 2016 May;69(5):942-52. doi: 10.1016/j.eururo.2015.10.053. Epub 2015 Dec 2. Eur Urol. 2016. PMID: 26651926
Proteomic maps of breast cancer subtypes.
Tyanova S, Albrechtsen R, Kronqvist P, Cox J, Mann M, Geiger T. Tyanova S, et al. Nat Commun. 2016 Jan 4;7:10259. doi: 10.1038/ncomms10259. Nat Commun. 2016. PMID: 26725330 Free PMC article.
Global, quantitative and dynamic mapping of protein subcellular localization.
Itzhak DN, Tyanova S, Cox J, Borner GH. Itzhak DN, et al. Among authors: tyanova s. Elife. 2016 Jun 9;5:e16950. doi: 10.7554/eLife.16950. Elife. 2016. PMID: 27278775 Free PMC article.
The Perseus computational platform for comprehensive analysis of (prote)omics data.
Tyanova S, Temu T, Sinitcyn P, Carlson A, Hein MY, Geiger T, Mann M, Cox J. Tyanova S, et al. Nat Methods. 2016 Sep;13(9):731-40. doi: 10.1038/nmeth.3901. Epub 2016 Jun 27. Nat Methods. 2016. PMID: 27348712
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