Umen J*[Author] - Search Results

Year	Number of Results
1995	4
1996	1
2000	1
2001	2
2002	1
2005	3
2006	1
2007	1
2008	3
2010	4
2011	2
2012	2
2013	4
2014	6
2015	4
2016	5
2017	4
2018	7
2019	3
2020	4
2021	5
2022	2
2023	4
2024	3
2025	1

1

Two CENH3 paralogs in the green alga Chlamydomonas reinhardtii have a redundantly essential function and associate with ZeppL-LINE1 elements.

Liu D, Wang M, Gent JI, Sun P, Dawe RK, Umen J. Liu D, et al. Among authors: umen j. Plant J. 2025 Apr;122(2):e70153. doi: 10.1111/tpj.70153. Plant J. 2025. PMID: 40289909

2

DNA cytosine methylation suppresses meiotic recombination at the sex-determining region.

Ge T, Gui X, Xu JX, Xia W, Wang CH, Yang W, Huang K, Walsh C, Umen JG, Walter J, Du YR, Chen H, Shao Z, Xu GL. Ge T, et al. Among authors: umen jg. Sci Adv. 2024 Oct 11;10(41):eadr2345. doi: 10.1126/sciadv.adr2345. Epub 2024 Oct 9. Sci Adv. 2024. PMID: 39383224 Free PMC article.

3

pyMS-Vis, an Open-Source Python Application for Visualizing and Investigating Deconvoluted Top-Down Mass Spectrometric Experiments: A Histone Proteoform Case Study.

Pesavento JJ, Bindra MS, Das U, Rommelfanger SR, Zhou M, Paša-Tolić L, Umen JG. Pesavento JJ, et al. Among authors: umen jg. Anal Chem. 2024 Sep 17;96(37):14727-14733. doi: 10.1021/acs.analchem.4c02650. Epub 2024 Aug 30. Anal Chem. 2024. PMID: 39213479 Free PMC article.

4

Subscaling of a cytosolic RNA binding protein governs cell size homeostasis in the multiple fission alga Chlamydomonas.

Liu D, Lopez-Paz C, Li Y, Zhuang X, Umen J. Liu D, et al. Among authors: umen j. PLoS Genet. 2024 Mar 18;20(3):e1010503. doi: 10.1371/journal.pgen.1010503. eCollection 2024 Mar. PLoS Genet. 2024. PMID: 38498520 Free PMC article.

5

A cell-based model for size control in the multiple fission alga Chlamydomonas reinhardtii.

Liu D, Vargas-García CA, Singh A, Umen J. Liu D, et al. Among authors: umen j. Curr Biol. 2023 Dec 4;33(23):5215-5224.e5. doi: 10.1016/j.cub.2023.10.023. Epub 2023 Nov 9. Curr Biol. 2023. PMID: 37949064 Free PMC article.

6

Identification and preliminary characterization of conserved uncharacterized proteins from Chlamydomonas reinhardtii, Arabidopsis thaliana, and Setaria viridis.

Knoshaug EP, Sun P, Nag A, Nguyen H, Mattoon EM, Zhang N, Liu J, Chen C, Cheng J, Zhang R, St John P, Umen J. Knoshaug EP, et al. Among authors: umen j. Plant Direct. 2023 Dec 1;7(12):e527. doi: 10.1002/pld3.527. eCollection 2023 Dec. Plant Direct. 2023. PMID: 38044962 Free PMC article.

7

Identification of cell-type specific alternative transcripts in the multicellular alga Volvox carteri.

Balasubramanian RN, Gao M, Umen J. Balasubramanian RN, et al. Among authors: umen j. BMC Genomics. 2023 Oct 30;24(1):654. doi: 10.1186/s12864-023-09558-0. BMC Genomics. 2023. PMID: 37904088 Free PMC article.

8

A conserved RWP-RK transcription factor VSR1 controls gametic differentiation in volvocine algae.

Geng S, Hamaji T, Ferris PJ, Gao M, Nishimura Y, Umen J. Geng S, et al. Among authors: umen j. Proc Natl Acad Sci U S A. 2023 Jul 18;120(29):e2305099120. doi: 10.1073/pnas.2305099120. Epub 2023 Jul 12. Proc Natl Acad Sci U S A. 2023. PMID: 37436957 Free PMC article.

9

The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle.

Strenkert D, Yildirim A, Yan J, Yoshinaga Y, Pellegrini M, O'Malley RC, Merchant SS, Umen JG. Strenkert D, et al. Among authors: umen jg. Plant J. 2022 Oct;112(2):352-368. doi: 10.1111/tpj.15948. Epub 2022 Sep 20. Plant J. 2022. PMID: 35986497 Free PMC article.

10

Chlamydomonas CHT7 is involved in repressing DNA replication and mitotic genes during synchronous growth.

Lin YT, Takeuchi T, Youk B, Umen J, Sears BB, Benning C. Lin YT, et al. Among authors: umen j. G3 (Bethesda). 2022 Mar 4;12(3):jkac023. doi: 10.1093/g3journal/jkac023. G3 (Bethesda). 2022. PMID: 35137070 Free PMC article.

11

Inositol polyphosphates and target of rapamycin kinase signalling govern photosystem II protein phosphorylation and photosynthetic function under light stress in Chlamydomonas.

Couso I, Smythers AL, Ford MM, Umen JG, Crespo JL, Hicks LM. Couso I, et al. Among authors: umen jg. New Phytol. 2021 Dec;232(5):2011-2025. doi: 10.1111/nph.17741. Epub 2021 Oct 5. New Phytol. 2021. PMID: 34529857 Free article.

12

Switching it up: algal insights into sexual transitions.

Coelho SM, Umen J. Coelho SM, et al. Among authors: umen j. Plant Reprod. 2021 Dec;34(4):287-296. doi: 10.1007/s00497-021-00417-0. Epub 2021 Jun 28. Plant Reprod. 2021. PMID: 34181073 Free PMC article.

13

Green Algal Models for Multicellularity.

Umen J, Herron MD. Umen J, et al. Annu Rev Genet. 2021 Nov 23;55:603-632. doi: 10.1146/annurev-genet-032321-091533. Epub 2021 Sep 21. Annu Rev Genet. 2021. PMID: 34546795 Review.

14

An Improved Top-Down Mass Spectrometry Characterization of Chlamydomonas reinhardtii Histones and Their Post-translational Modifications.

Rommelfanger SR, Zhou M, Shaghasi H, Tzeng SC, Evans BS, Paša-Tolić L, Umen JG, Pesavento JJ. Rommelfanger SR, et al. Among authors: umen jg. J Am Soc Mass Spectrom. 2021 Jul 7;32(7):1671-1688. doi: 10.1021/jasms.1c00029. Epub 2021 Jun 24. J Am Soc Mass Spectrom. 2021. PMID: 34165968 Free PMC article.

15

Three genomes in the algal genus Volvox reveal the fate of a haploid sex-determining region after a transition to homothallism.

Yamamoto K, Hamaji T, Kawai-Toyooka H, Matsuzaki R, Takahashi F, Nishimura Y, Kawachi M, Noguchi H, Minakuchi Y, Umen JG, Toyoda A, Nozaki H. Yamamoto K, et al. Among authors: umen jg. Proc Natl Acad Sci U S A. 2021 May 25;118(21):e2100712118. doi: 10.1073/pnas.2100712118. Proc Natl Acad Sci U S A. 2021. PMID: 34011609 Free PMC article.

16

Modulation of CHT7 Complexes during Light/Dark- and Nitrogen-Mediated Life Cycle Transitions of Chlamydomonas.

Takeuchi T, Lin YT, Fekaris N, Umen J, Sears BB, Benning C. Takeuchi T, et al. Among authors: umen j. Plant Physiol. 2020 Dec;184(4):1762-1774. doi: 10.1104/pp.20.00864. Epub 2020 Oct 1. Plant Physiol. 2020. PMID: 33004613 Free PMC article.

17

Cleavage-furrow formation without F-actin in Chlamydomonas.

Onishi M, Umen JG, Cross FR, Pringle JR. Onishi M, et al. Among authors: umen jg. Proc Natl Acad Sci U S A. 2020 Aug 4;117(31):18511-18520. doi: 10.1073/pnas.1920337117. Epub 2020 Jul 20. Proc Natl Acad Sci U S A. 2020. PMID: 32690698 Free PMC article.

18

Volvox and volvocine green algae.

Umen JG. Umen JG. Evodevo. 2020 Jul 1;11:13. doi: 10.1186/s13227-020-00158-7. eCollection 2020. Evodevo. 2020. PMID: 32626570 Free PMC article. Review.

19

Phosphorus Availability Regulates TORC1 Signaling via LST8 in Chlamydomonas.

Couso I, Pérez-Pérez ME, Ford MM, Martínez-Force E, Hicks LM, Umen JG, Crespo JL. Couso I, et al. Among authors: umen jg. Plant Cell. 2020 Jan;32(1):69-80. doi: 10.1105/tpc.19.00179. Epub 2019 Nov 11. Plant Cell. 2020. PMID: 31712405 Free PMC article.

20

Algal Sex Determination and the Evolution of Anisogamy.

Umen J, Coelho S. Umen J, et al. Annu Rev Microbiol. 2019 Sep 8;73:267-291. doi: 10.1146/annurev-micro-020518-120011. Epub 2019 May 31. Annu Rev Microbiol. 2019. PMID: 31150584 Review.

21

Investigating the effect of target of rapamycin kinase inhibition on the Chlamydomonas reinhardtii phosphoproteome: from known homologs to new targets.

Werth EG, McConnell EW, Couso Lianez I, Perrine Z, Crespo JL, Umen JG, Hicks LM. Werth EG, et al. Among authors: umen jg. New Phytol. 2019 Jan;221(1):247-260. doi: 10.1111/nph.15339. Epub 2018 Jul 24. New Phytol. 2019. PMID: 30040123 Free article.

22

Sizing up the cell cycle: systems and quantitative approaches in Chlamydomonas.

Umen JG. Umen JG. Curr Opin Plant Biol. 2018 Dec;46:96-103. doi: 10.1016/j.pbi.2018.08.003. Epub 2018 Sep 10. Curr Opin Plant Biol. 2018. PMID: 30212737 Free PMC article. Review.

23

UV Chromosomes and Haploid Sexual Systems.

Coelho SM, Gueno J, Lipinska AP, Cock JM, Umen JG. Coelho SM, et al. Among authors: umen jg. Trends Plant Sci. 2018 Sep;23(9):794-807. doi: 10.1016/j.tplants.2018.06.005. Epub 2018 Jul 12. Trends Plant Sci. 2018. PMID: 30007571 Free PMC article. Review.

24

Evolutionary divergence of the sex-determining gene MID uncoupled from the transition to anisogamy in volvocine algae.

Geng S, Miyagi A, Umen JG. Geng S, et al. Among authors: umen jg. Development. 2018 Apr 9;145(7):dev162537. doi: 10.1242/dev.162537. Development. 2018. PMID: 29549112 Free PMC article.

25

Autophagic flux is required for the synthesis of triacylglycerols and ribosomal protein turnover in Chlamydomonas.

Couso I, Pérez-Pérez ME, Martínez-Force E, Kim HS, He Y, Umen JG, Crespo JL. Couso I, et al. Among authors: umen jg. J Exp Bot. 2018 Mar 14;69(6):1355-1367. doi: 10.1093/jxb/erx372. J Exp Bot. 2018. PMID: 29053817 Free PMC article.

26

Anisogamy evolved with a reduced sex-determining region in volvocine green algae.

Hamaji T, Kawai-Toyooka H, Uchimura H, Suzuki M, Noguchi H, Minakuchi Y, Toyoda A, Fujiyama A, Miyagishima SY, Umen JG, Nozaki H. Hamaji T, et al. Among authors: umen jg. Commun Biol. 2018 Mar 8;1:17. doi: 10.1038/s42003-018-0019-5. eCollection 2018. Commun Biol. 2018. PMID: 30271904 Free PMC article.

27

Cell-Type Transcriptomes of the Multicellular Green Alga Volvox carteri Yield Insights into the Evolutionary Origins of Germ and Somatic Differentiation Programs.

Matt GY, Umen JG. Matt GY, et al. Among authors: umen jg. G3 (Bethesda). 2018 Feb 2;8(2):531-550. doi: 10.1534/g3.117.300253. G3 (Bethesda). 2018. PMID: 29208647 Free PMC article.

28

Identification of Chlamydomonas reinhardtii endogenous genic flanking sequences for improved transgene expression.

López-Paz C, Liu D, Geng S, Umen JG. López-Paz C, et al. Among authors: umen jg. Plant J. 2017 Dec;92(6):1232-1244. doi: 10.1111/tpj.13731. Epub 2017 Nov 18. Plant J. 2017. PMID: 28980350 Free PMC article.

29

Eukaryotic Sexual Reproduction Evoked "with a Little Help from My Friends".

Umen J, Goodenough U, Heitman J. Umen J, et al. Cell. 2017 Sep 7;170(6):1059-1061. doi: 10.1016/j.cell.2017.08.038. Cell. 2017. PMID: 28886378 Free article.

30

Non-model model organisms.

Russell JJ, Theriot JA, Sood P, Marshall WF, Landweber LF, Fritz-Laylin L, Polka JK, Oliferenko S, Gerbich T, Gladfelter A, Umen J, Bezanilla M, Lancaster MA, He S, Gibson MC, Goldstein B, Tanaka EM, Hu CK, Brunet A. Russell JJ, et al. Among authors: umen j. BMC Biol. 2017 Jun 29;15(1):55. doi: 10.1186/s12915-017-0391-5. BMC Biol. 2017. PMID: 28662661 Free PMC article.

31

Probing the global kinome and phosphoproteome in Chlamydomonas reinhardtii via sequential enrichment and quantitative proteomics.

Werth EG, McConnell EW, Gilbert TS, Couso Lianez I, Perez CA, Manley CK, Graves LM, Umen JG, Hicks LM. Werth EG, et al. Among authors: umen jg. Plant J. 2017 Jan;89(2):416-426. doi: 10.1111/tpj.13384. Epub 2017 Jan 17. Plant J. 2017. PMID: 27671103 Free article.

32

Volvox: A simple algal model for embryogenesis, morphogenesis and cellular differentiation.

Matt G, Umen J. Matt G, et al. Among authors: umen j. Dev Biol. 2016 Nov 1;419(1):99-113. doi: 10.1016/j.ydbio.2016.07.014. Epub 2016 Jul 19. Dev Biol. 2016. PMID: 27451296 Free PMC article. Review.

33

Synergism between Inositol Polyphosphates and TOR Kinase Signaling in Nutrient Sensing, Growth Control, and Lipid Metabolism in Chlamydomonas.

Couso I, Evans BS, Li J, Liu Y, Ma F, Diamond S, Allen DK, Umen JG. Couso I, et al. Among authors: umen jg. Plant Cell. 2016 Sep;28(9):2026-2042. doi: 10.1105/tpc.16.00351. Epub 2016 Sep 6. Plant Cell. 2016. PMID: 27600537 Free PMC article.

34

Identification and Characterization of a cis-Regulatory Element for Zygotic Gene Expression in Chlamydomonas reinhardtii.

Hamaji T, Lopez D, Pellegrini M, Umen J. Hamaji T, et al. Among authors: umen j. G3 (Bethesda). 2016 Jun 1;6(6):1541-8. doi: 10.1534/g3.116.029181. G3 (Bethesda). 2016. PMID: 27172209 Free PMC article.

35

Sequence of the Gonium pectorale Mating Locus Reveals a Complex and Dynamic History of Changes in Volvocine Algal Mating Haplotypes.

Hamaji T, Mogi Y, Ferris PJ, Mori T, Miyagishima S, Kabeya Y, Nishimura Y, Toyoda A, Noguchi H, Fujiyama A, Olson BJ, Marriage TN, Nishii I, Umen JG, Nozaki H. Hamaji T, et al. Among authors: umen jg. G3 (Bethesda). 2016 May 3;6(5):1179-89. doi: 10.1534/g3.115.026229. G3 (Bethesda). 2016. PMID: 26921294 Free PMC article.

36

A new class of cyclin dependent kinase in Chlamydomonas is required for coupling cell size to cell division.

Li Y, Liu D, López-Paz C, Olson BJ, Umen JG. Li Y, et al. Among authors: umen jg. Elife. 2016 Mar 25;5:e10767. doi: 10.7554/eLife.10767. Elife. 2016. PMID: 27015111 Free PMC article.

37

Dynamic Changes in the Transcriptome and Methylome of Chlamydomonas reinhardtii throughout Its Life Cycle.

Lopez D, Hamaji T, Kropat J, De Hoff P, Morselli M, Rubbi L, Fitz-Gibbon S, Gallaher SD, Merchant SS, Umen J, Pellegrini M. Lopez D, et al. Among authors: umen j. Plant Physiol. 2015 Dec;169(4):2730-43. doi: 10.1104/pp.15.00861. Epub 2015 Oct 8. Plant Physiol. 2015. PMID: 26450704 Free PMC article.

38

High-Resolution Profiling of a Synchronized Diurnal Transcriptome from Chlamydomonas reinhardtii Reveals Continuous Cell and Metabolic Differentiation.

Zones JM, Blaby IK, Merchant SS, Umen JG. Zones JM, et al. Among authors: umen jg. Plant Cell. 2015 Oct;27(10):2743-69. doi: 10.1105/tpc.15.00498. Epub 2015 Oct 2. Plant Cell. 2015. PMID: 26432862 Free PMC article.

39

Lost and Found: The Secret Sex Lives of Bdelloid Rotifers.

Umen JG. Umen JG. Genetics. 2015 Jun;200(2):409-12. doi: 10.1534/genetics.115.176388. Genetics. 2015. PMID: 26088432 Free PMC article. No abstract available.

40

The Chlamydomonas cell cycle.

Cross FR, Umen JG. Cross FR, et al. Among authors: umen jg. Plant J. 2015 May;82(3):370-392. doi: 10.1111/tpj.12795. Epub 2015 Apr 15. Plant J. 2015. PMID: 25690512 Free PMC article. Review.

41

Defects in a new class of sulfate/anion transporter link sulfur acclimation responses to intracellular glutathione levels and cell cycle control.

Fang SC, Chung CL, Chen CH, Lopez-Paz C, Umen JG. Fang SC, et al. Among authors: umen jg. Plant Physiol. 2014 Dec;166(4):1852-68. doi: 10.1104/pp.114.251009. Epub 2014 Oct 31. Plant Physiol. 2014. PMID: 25361960 Free PMC article.

42

Waking sleeping algal cells.

Li X, Umen JG, Jonikas MC. Li X, et al. Among authors: umen jg. Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):15610-1. doi: 10.1073/pnas.1418295111. Epub 2014 Oct 23. Proc Natl Acad Sci U S A. 2014. PMID: 25341728 Free PMC article. No abstract available.

43

Green algae and the origins of multicellularity in the plant kingdom.

Umen JG. Umen JG. Cold Spring Harb Perspect Biol. 2014 Oct 16;6(11):a016170. doi: 10.1101/cshperspect.a016170. Cold Spring Harb Perspect Biol. 2014. PMID: 25324214 Free PMC article. Review.

44

The Chlamydomonas genome project: a decade on.

Blaby IK, Blaby-Haas CE, Tourasse N, Hom EF, Lopez D, Aksoy M, Grossman A, Umen J, Dutcher S, Porter M, King S, Witman GB, Stanke M, Harris EH, Goodstein D, Grimwood J, Schmutz J, Vallon O, Merchant SS, Prochnik S. Blaby IK, et al. Among authors: umen j. Trends Plant Sci. 2014 Oct;19(10):672-80. doi: 10.1016/j.tplants.2014.05.008. Epub 2014 Jun 17. Trends Plant Sci. 2014. PMID: 24950814 Free PMC article. Review.

45

Evolution of sexes from an ancestral mating-type specification pathway.

Geng S, De Hoff P, Umen JG. Geng S, et al. Among authors: umen jg. PLoS Biol. 2014 Jul 8;12(7):e1001904. doi: 10.1371/journal.pbio.1001904. eCollection 2014 Jul. PLoS Biol. 2014. PMID: 25003332 Free PMC article.

46

The path to triacylglyceride obesity in the sta6 strain of Chlamydomonas reinhardtii.

Goodenough U, Blaby I, Casero D, Gallaher SD, Goodson C, Johnson S, Lee JH, Merchant SS, Pellegrini M, Roth R, Rusch J, Singh M, Umen JG, Weiss TL, Wulan T. Goodenough U, et al. Among authors: umen jg. Eukaryot Cell. 2014 May;13(5):591-613. doi: 10.1128/EC.00013-14. Epub 2014 Feb 28. Eukaryot Cell. 2014. PMID: 24585881 Free PMC article.

47

Evolution of sex: mating rituals of a pre-metazoan.

Umen J, Heitman J. Umen J, et al. Curr Biol. 2013 Nov 18;23(22):R1006-R1008. doi: 10.1016/j.cub.2013.10.009. Curr Biol. 2013. PMID: 24262825 Free article.

48

Species and population level molecular profiling reveals cryptic recombination and emergent asymmetry in the dimorphic mating locus of C. reinhardtii.

De Hoff PL, Ferris P, Olson BJ, Miyagi A, Geng S, Umen JG. De Hoff PL, et al. Among authors: umen jg. PLoS Genet. 2013 Aug;9(8):e1003724. doi: 10.1371/journal.pgen.1003724. Epub 2013 Aug 29. PLoS Genet. 2013. PMID: 24009520 Free PMC article.

49

Genetics: swinging ciliates' seven sexes.

Umen JG. Umen JG. Curr Biol. 2013 Jun 3;23(11):R475-7. doi: 10.1016/j.cub.2013.04.036. Curr Biol. 2013. PMID: 23743411 Free article.

50

The evolution of male-female sexual dimorphism predates the gender-based divergence of the mating locus gene MAT3/RB.

Hiraide R, Kawai-Toyooka H, Hamaji T, Matsuzaki R, Kawafune K, Abe J, Sekimoto H, Umen J, Nozaki H. Hiraide R, et al. Among authors: umen j. Mol Biol Evol. 2013 May;30(5):1038-40. doi: 10.1093/molbev/mst018. Epub 2013 Jan 30. Mol Biol Evol. 2013. PMID: 23364323 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Results by year

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

75 results

Results by year

Search Page

Filters

My Custom Filters

Results by year

Publication date

Text availability

Article attribute

Article type

Additional filters

Article Language

Species

Sex

Age

Other

Search Results

75 results

Results by year