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RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW. Lagesen K, et al. Among authors: ussery dw. Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22. Nucleic Acids Res. 2007. PMID: 17452365 Free PMC article.
Bias of purine stretches in sequenced chromosomes.
Ussery D, Soumpasis DM, Brunak S, Staerfeldt HH, Worning P, Krogh A. Ussery D, et al. Comput Chem. 2002 Jul;26(5):531-41. doi: 10.1016/s0097-8485(02)00013-x. Comput Chem. 2002. PMID: 12144181
A DNA structural atlas for Escherichia coli.
Pedersen AG, Jensen LJ, Brunak S, Staerfeldt HH, Ussery DW. Pedersen AG, et al. Among authors: ussery dw. J Mol Biol. 2000 Jun 16;299(4):907-30. doi: 10.1006/jmbi.2000.3787. J Mol Biol. 2000. PMID: 10843847
The genus burkholderia: analysis of 56 genomic sequences.
Ussery DW, Kiil K, Lagesen K, Sicheritz-Pontén T, Bohlin J, Wassenaar TM. Ussery DW, et al. Genome Dyn. 2009;6:140-157. doi: 10.1159/000235768. Epub 2009 Aug 19. Genome Dyn. 2009. PMID: 19696499
Genome comparison of bacterial pathogens.
Wassenaar TM, Bohlin J, Binnewies TT, Ussery DW. Wassenaar TM, et al. Among authors: ussery dw. Genome Dyn. 2009;6:1-20. doi: 10.1159/000235759. Epub 2009 Aug 19. Genome Dyn. 2009. PMID: 19696490
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