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The treatment-naive microbiome in new-onset Crohn's disease.
Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M, Morgan XC, Kostic AD, Luo C, González A, McDonald D, Haberman Y, Walters T, Baker S, Rosh J, Stephens M, Heyman M, Markowitz J, Baldassano R, Griffiths A, Sylvester F, Mack D, Kim S, Crandall W, Hyams J, Huttenhower C, Knight R, Xavier RJ. Gevers D, et al. Among authors: Van Treuren W. Cell Host Microbe. 2014 Mar 12;15(3):382-392. doi: 10.1016/j.chom.2014.02.005. Cell Host Microbe. 2014. PMID: 24629344 Free PMC article.
A Gut Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection.
Jacobson A, Lam L, Rajendram M, Tamburini F, Honeycutt J, Pham T, Van Treuren W, Pruss K, Stabler SR, Lugo K, Bouley DM, Vilches-Moure JG, Smith M, Sonnenburg JL, Bhatt AS, Huang KC, Monack D. Jacobson A, et al. Among authors: Van Treuren W. Cell Host Microbe. 2018 Aug 8;24(2):296-307.e7. doi: 10.1016/j.chom.2018.07.002. Epub 2018 Jul 26. Cell Host Microbe. 2018. PMID: 30057174 Free PMC article.
The intestinal metabolome: an intersection between microbiota and host.
Ursell LK, Haiser HJ, Van Treuren W, Garg N, Reddivari L, Vanamala J, Dorrestein PC, Turnbaugh PJ, Knight R. Ursell LK, et al. Among authors: Van Treuren W. Gastroenterology. 2014 May;146(6):1470-6. doi: 10.1053/j.gastro.2014.03.001. Epub 2014 Mar 11. Gastroenterology. 2014. PMID: 24631493 Free PMC article. Review.
Longitudinal analysis of microbial interaction between humans and the indoor environment.
Lax S, Smith DP, Hampton-Marcell J, Owens SM, Handley KM, Scott NM, Gibbons SM, Larsen P, Shogan BD, Weiss S, Metcalf JL, Ursell LK, Vázquez-Baeza Y, Van Treuren W, Hasan NA, Gibson MK, Colwell R, Dantas G, Knight R, Gilbert JA. Lax S, et al. Among authors: Van Treuren W. Science. 2014 Aug 29;345(6200):1048-52. doi: 10.1126/science.1254529. Science. 2014. PMID: 25170151 Free PMC article.
Replenishing our defensive microbes.
Ursell LK, Van Treuren W, Metcalf JL, Pirrung M, Gewirtz A, Knight R. Ursell LK, et al. Among authors: Van Treuren W. Bioessays. 2013 Sep;35(9):810-7. doi: 10.1002/bies.201300018. Epub 2013 Jul 8. Bioessays. 2013. PMID: 23836415 Free PMC article. Review.
Bacteria from diverse habitats colonize and compete in the mouse gut.
Seedorf H, Griffin NW, Ridaura VK, Reyes A, Cheng J, Rey FE, Smith MI, Simon GM, Scheffrahn RH, Woebken D, Spormann AM, Van Treuren W, Ursell LK, Pirrung M, Robbins-Pianka A, Cantarel BL, Lombard V, Henrissat B, Knight R, Gordon JI. Seedorf H, et al. Among authors: Van Treuren W. Cell. 2014 Oct 9;159(2):253-66. doi: 10.1016/j.cell.2014.09.008. Epub 2014 Oct 2. Cell. 2014. PMID: 25284151 Free PMC article.
Human genetics shape the gut microbiome.
Goodrich JK, Waters JL, Poole AC, Sutter JL, Koren O, Blekhman R, Beaumont M, Van Treuren W, Knight R, Bell JT, Spector TD, Clark AG, Ley RE. Goodrich JK, et al. Among authors: Van Treuren W. Cell. 2014 Nov 6;159(4):789-99. doi: 10.1016/j.cell.2014.09.053. Cell. 2014. PMID: 25417156 Free PMC article.
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.
Weiss S, Van Treuren W, Lozupone C, Faust K, Friedman J, Deng Y, Xia LC, Xu ZZ, Ursell L, Alm EJ, Birmingham A, Cram JA, Fuhrman JA, Raes J, Sun F, Zhou J, Knight R. Weiss S, et al. Among authors: Van Treuren W. ISME J. 2016 Jul;10(7):1669-81. doi: 10.1038/ismej.2015.235. Epub 2016 Feb 23. ISME J. 2016. PMID: 26905627 Free PMC article.
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