Vandepoele K - Search Results

1

Curse: building expression atlases and co-expression networks from public RNA-Seq data.

Vaneechoutte D, Vandepoele K. Vaneechoutte D, et al. Among authors: vandepoele k. Bioinformatics. 2019 Aug 15;35(16):2880-2881. doi: 10.1093/bioinformatics/bty1052. Bioinformatics. 2019. PMID: 30590391

2

Virus-host coexistence in phytoplankton through the genomic lens.

Yau S, Krasovec M, Benites LF, Rombauts S, Groussin M, Vancaester E, Aury JM, Derelle E, Desdevises Y, Escande ML, Grimsley N, Guy J, Moreau H, Sanchez-Brosseau S, van de Peer Y, Vandepoele K, Gourbiere S, Piganeau G. Yau S, et al. Among authors: vandepoele k. Sci Adv. 2020 Apr 1;6(14):eaay2587. doi: 10.1126/sciadv.aay2587. eCollection 2020 Apr. Sci Adv. 2020. PMID: 32270031 Free PMC article.

3

Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes.

Naouar N, Vandepoele K, Lammens T, Casneuf T, Zeller G, van Hummelen P, Weigel D, Rätsch G, Inzé D, Kuiper M, De Veylder L, Vuylsteke M. Naouar N, et al. Among authors: vandepoele k. Plant J. 2009 Jan;57(1):184-94. doi: 10.1111/j.1365-313X.2008.03662.x. Epub 2008 Sep 19. Plant J. 2009. PMID: 18764924

4

Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks.

Vandepoele K, Quimbaya M, Casneuf T, De Veylder L, Van de Peer Y. Vandepoele K, et al. Plant Physiol. 2009 Jun;150(2):535-46. doi: 10.1104/pp.109.136028. Epub 2009 Apr 8. Plant Physiol. 2009. PMID: 19357200 Free PMC article.

5

PLAZA: a comparative genomics resource to study gene and genome evolution in plants.

Proost S, Van Bel M, Sterck L, Billiau K, Van Parys T, Van de Peer Y, Vandepoele K. Proost S, et al. Among authors: vandepoele k. Plant Cell. 2009 Dec;21(12):3718-31. doi: 10.1105/tpc.109.071506. Epub 2009 Dec 29. Plant Cell. 2009. PMID: 20040540 Free PMC article.

6

A greedy, graph-based algorithm for the alignment of multiple homologous gene lists.

Fostier J, Proost S, Dhoedt B, Saeys Y, Demeester P, Van de Peer Y, Vandepoele K. Fostier J, et al. Among authors: vandepoele k. Bioinformatics. 2011 Mar 15;27(6):749-56. doi: 10.1093/bioinformatics/btr008. Epub 2011 Jan 6. Bioinformatics. 2011. PMID: 21216775

7

Comparative co-expression analysis in plant biology.

Movahedi S, Van Bel M, Heyndrickx KS, Vandepoele K. Movahedi S, et al. Among authors: vandepoele k. Plant Cell Environ. 2012 Oct;35(10):1787-98. doi: 10.1111/j.1365-3040.2012.02517.x. Epub 2012 May 10. Plant Cell Environ. 2012. PMID: 22489681 Review.

8

pico-PLAZA, a genome database of microbial photosynthetic eukaryotes.

Vandepoele K, Van Bel M, Richard G, Van Landeghem S, Verhelst B, Moreau H, Van de Peer Y, Grimsley N, Piganeau G. Vandepoele K, et al. Environ Microbiol. 2013 Aug;15(8):2147-53. doi: 10.1111/1462-2920.12174. Epub 2013 Jul 4. Environ Microbiol. 2013. PMID: 23826978

9

MAGIC: access portal to a cross-platform gene expression compendium for maize.

Fu Q, Fierro AC, Meysman P, Sanchez-Rodriguez A, Vandepoele K, Marchal K, Engelen K. Fu Q, et al. Among authors: vandepoele k. Bioinformatics. 2014 May 1;30(9):1316-8. doi: 10.1093/bioinformatics/btt739. Epub 2014 Jan 8. Bioinformatics. 2014. PMID: 24407224

10

A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification.

Verkest A, Abeel T, Heyndrickx KS, Van Leene J, Lanz C, Van De Slijke E, De Winne N, Eeckhout D, Persiau G, Van Breusegem F, Inzé D, Vandepoele K, De Jaeger G. Verkest A, et al. Among authors: vandepoele k. Plant Physiol. 2014 Mar;164(3):1122-33. doi: 10.1104/pp.113.229617. Epub 2014 Jan 22. Plant Physiol. 2014. PMID: 24453163 Free PMC article.

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