Vargas-Rodriguez O - Search Results

1

Transfer RNAs with novel cloverleaf structures.

Mukai T, Vargas-Rodriguez O, Englert M, Tripp HJ, Ivanova NN, Rubin EM, Kyrpides NC, Söll D. Mukai T, et al. Nucleic Acids Res. 2017 Mar 17;45(5):2776-2785. doi: 10.1093/nar/gkw898. Nucleic Acids Res. 2017. PMID: 28076288 Free PMC article.

2

Distinct tRNA recognition strategies used by a homologous family of editing domains prevent mistranslation.

Das M, Vargas-Rodriguez O, Goto Y, Suga H, Musier-Forsyth K. Das M, et al. Nucleic Acids Res. 2014 Apr;42(6):3943-53. doi: 10.1093/nar/gkt1332. Epub 2013 Dec 25. Nucleic Acids Res. 2014. PMID: 24371276 Free PMC article.

3

Emergent rules for codon choice elucidated by editing rare arginine codons in Escherichia coli.

Napolitano MG, Landon M, Gregg CJ, Lajoie MJ, Govindarajan L, Mosberg JA, Kuznetsov G, Goodman DB, Vargas-Rodriguez O, Isaacs FJ, Söll D, Church GM. Napolitano MG, et al. Proc Natl Acad Sci U S A. 2016 Sep 20;113(38):E5588-97. doi: 10.1073/pnas.1605856113. Epub 2016 Sep 6. Proc Natl Acad Sci U S A. 2016. PMID: 27601680 Free PMC article.

4

A genomically modified Escherichia coli strain carrying an orthogonal E. coli histidyl-tRNA synthetase•tRNA^His pair.

Englert M, Vargas-Rodriguez O, Reynolds NM, Wang YS, Söll D, Umehara T. Englert M, et al. Biochim Biophys Acta Gen Subj. 2017 Nov;1861(11 Pt B):3009-3015. doi: 10.1016/j.bbagen.2017.03.003. Epub 2017 Mar 10. Biochim Biophys Acta Gen Subj. 2017. PMID: 28288813 Free PMC article.

5

The central role of tRNA in genetic code expansion.

Reynolds NM, Vargas-Rodriguez O, Söll D, Crnković A. Reynolds NM, et al. Biochim Biophys Acta Gen Subj. 2017 Nov;1861(11 Pt B):3001-3008. doi: 10.1016/j.bbagen.2017.03.012. Epub 2017 Mar 18. Biochim Biophys Acta Gen Subj. 2017. PMID: 28323071 Free PMC article. Review.

6

Engineering posttranslational proofreading to discriminate nonstandard amino acids.

Kunjapur AM, Stork DA, Kuru E, Vargas-Rodriguez O, Landon M, Söll D, Church GM. Kunjapur AM, et al. Proc Natl Acad Sci U S A. 2018 Jan 16;115(3):619-624. doi: 10.1073/pnas.1715137115. Epub 2018 Jan 4. Proc Natl Acad Sci U S A. 2018. PMID: 29301968 Free PMC article.

7

Effects of Heterologous tRNA Modifications on the Production of Proteins Containing Noncanonical Amino Acids.

Crnković A, Vargas-Rodriguez O, Merkuryev A, Söll D. Crnković A, et al. Bioengineering (Basel). 2018 Feb 2;5(1):11. doi: 10.3390/bioengineering5010011. Bioengineering (Basel). 2018. PMID: 29393901 Free PMC article.

8

Recoding of the selenocysteine UGA codon by cysteine in the presence of a non-canonical tRNA^Cys and elongation factor SelB.

Vargas-Rodriguez O, Englert M, Merkuryev A, Mukai T, Söll D. Vargas-Rodriguez O, et al. RNA Biol. 2018;15(4-5):471-479. doi: 10.1080/15476286.2018.1474074. Epub 2018 Jun 18. RNA Biol. 2018. PMID: 29879865 Free PMC article.

9

Upgrading aminoacyl-tRNA synthetases for genetic code expansion.

Vargas-Rodriguez O, Sevostyanova A, Söll D, Crnković A. Vargas-Rodriguez O, et al. Curr Opin Chem Biol. 2018 Oct;46:115-122. doi: 10.1016/j.cbpa.2018.07.014. Epub 2018 Jul 27. Curr Opin Chem Biol. 2018. PMID: 30059834 Free PMC article. Review.

10

Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.

Melnikov SV, Khabibullina NF, Mairhofer E, Vargas-Rodriguez O, Reynolds NM, Micura R, Söll D, Polikanov YS. Melnikov SV, et al. Nucleic Acids Res. 2019 Feb 28;47(4):2089-2100. doi: 10.1093/nar/gky1211. Nucleic Acids Res. 2019. PMID: 30520988 Free PMC article.

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