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A general theory of DNA-mediated and other valence-limited colloidal interactions.
Varilly P, Angioletti-Uberti S, Mognetti BM, Frenkel D. Varilly P, et al. J Chem Phys. 2012 Sep 7;137(9):094108. doi: 10.1063/1.4748100. J Chem Phys. 2012. PMID: 22957556
Designing stimulus-sensitive colloidal walkers.
Martinez-Veracoechea FJ, Mognetti BM, Angioletti-Uberti S, Varilly P, Frenkel D, Dobnikar J. Martinez-Veracoechea FJ, et al. Among authors: varilly p. Soft Matter. 2014 May 21;10(19):3463-70. doi: 10.1039/c3sm53096e. Epub 2014 Mar 20. Soft Matter. 2014. PMID: 24647520 Free article.
Communication: a simple analytical formula for the free energy of ligand-receptor-mediated interactions.
Angioletti-Uberti S, Varilly P, Mognetti BM, Tkachenko AV, Frenkel D. Angioletti-Uberti S, et al. Among authors: varilly p. J Chem Phys. 2013 Jan 14;138(2):021102. doi: 10.1063/1.4775806. J Chem Phys. 2013. PMID: 23320658 Free article.
Predicting DNA-mediated colloidal pair interactions.
Mognetti BM, Varilly P, Angioletti-Uberti S, Martinez-Veracoechea FJ, Dobnikar J, Leunissen ME, Frenkel D. Mognetti BM, et al. Among authors: varilly p. Proc Natl Acad Sci U S A. 2012 Feb 14;109(7):E378-9; author reply E380. doi: 10.1073/pnas.1119991109. Epub 2012 Jan 27. Proc Natl Acad Sci U S A. 2012. PMID: 22308446 Free PMC article. No abstract available.
Effect of inert tails on the thermodynamics of DNA hybridization.
Di Michele L, Mognetti BM, Yanagishima T, Varilly P, Ruff Z, Frenkel D, Eiser E. Di Michele L, et al. Among authors: varilly p. J Am Chem Soc. 2014 May 7;136(18):6538-41. doi: 10.1021/ja500027v. Epub 2014 Apr 23. J Am Chem Soc. 2014. PMID: 24750023
Mobile linkers on DNA-coated colloids: valency without patches.
Angioletti-Uberti S, Varilly P, Mognetti BM, Frenkel D. Angioletti-Uberti S, et al. Among authors: varilly p. Phys Rev Lett. 2014 Sep 19;113(12):128303. doi: 10.1103/PhysRevLett.113.128303. Epub 2014 Sep 17. Phys Rev Lett. 2014. PMID: 25279648 Free article.
An improved coarse-grained model of solvation and the hydrophobic effect.
Varilly P, Patel AJ, Chandler D. Varilly P, et al. J Chem Phys. 2011 Feb 21;134(7):074109. doi: 10.1063/1.3532939. J Chem Phys. 2011. PMID: 21341830 Free PMC article.
Consistent Treatment of Hydrophobicity in Protein Lattice Models Accounts for Cold Denaturation.
van Dijk E, Varilly P, Knowles TP, Frenkel D, Abeln S. van Dijk E, et al. Among authors: varilly p. Phys Rev Lett. 2016 Feb 19;116(7):078101. doi: 10.1103/PhysRevLett.116.078101. Epub 2016 Feb 16. Phys Rev Lett. 2016. PMID: 26943560
Intra-chain organisation of hydrophobic residues controls inter-chain aggregation rates of amphiphilic polymers.
Varilly P, Willard AP, Kirkegaard JB, Knowles TP, Chandler D. Varilly P, et al. J Chem Phys. 2017 Apr 7;146(13):135102. doi: 10.1063/1.4977932. J Chem Phys. 2017. PMID: 28390364
Extended surfaces modulate hydrophobic interactions of neighboring solutes.
Patel AJ, Varilly P, Jamadagni SN, Acharya H, Garde S, Chandler D. Patel AJ, et al. Among authors: varilly p. Proc Natl Acad Sci U S A. 2011 Oct 25;108(43):17678-83. doi: 10.1073/pnas.1110703108. Epub 2011 Oct 10. Proc Natl Acad Sci U S A. 2011. PMID: 21987795 Free PMC article.
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