Varma S - Search Results

1

rcellminer: exploring molecular profiles and drug response of the NCI-60 cell lines in R.

Luna A, Rajapakse VN, Sousa FG, Gao J, Schultz N, Varma S, Reinhold W, Sander C, Pommier Y. Luna A, et al. Among authors: varma s. Bioinformatics. 2016 Apr 15;32(8):1272-4. doi: 10.1093/bioinformatics/btv701. Epub 2015 Dec 3. Bioinformatics. 2016. PMID: 26635141 Free PMC article.

2

Predicting cisplatin and trabectedin drug sensitivity in ovarian and colon cancers.

Stevens EV, Nishizuka S, Antony S, Reimers M, Varma S, Young L, Munson PJ, Weinstein JN, Kohn EC, Pommier Y. Stevens EV, et al. Among authors: varma s. Mol Cancer Ther. 2008 Jan;7(1):10-8. doi: 10.1158/1535-7163.MCT-07-0192. Epub 2008 Jan 9. Mol Cancer Ther. 2008. PMID: 18187810

3

Asparagine synthetase is a predictive biomarker of L-asparaginase activity in ovarian cancer cell lines.

Lorenzi PL, Llamas J, Gunsior M, Ozbun L, Reinhold WC, Varma S, Ji H, Kim H, Hutchinson AA, Kohn EC, Goldsmith PK, Birrer MJ, Weinstein JN. Lorenzi PL, et al. Among authors: varma s. Mol Cancer Ther. 2008 Oct;7(10):3123-8. doi: 10.1158/1535-7163.MCT-08-0589. Mol Cancer Ther. 2008. PMID: 18852115 Free PMC article.

4

DNA fingerprinting of the NCI-60 cell line panel.

Lorenzi PL, Reinhold WC, Varma S, Hutchinson AA, Pommier Y, Chanock SJ, Weinstein JN. Lorenzi PL, et al. Among authors: varma s. Mol Cancer Ther. 2009 Apr;8(4):713-24. doi: 10.1158/1535-7163.MCT-08-0921. Mol Cancer Ther. 2009. PMID: 19372543 Free PMC article.

5

CellMiner: a relational database and query tool for the NCI-60 cancer cell lines.

Shankavaram UT, Varma S, Kane D, Sunshine M, Chary KK, Reinhold WC, Pommier Y, Weinstein JN. Shankavaram UT, et al. Among authors: varma s. BMC Genomics. 2009 Jun 23;10:277. doi: 10.1186/1471-2164-10-277. BMC Genomics. 2009. PMID: 19549304 Free PMC article.

6

Evaluation of current methods used to analyze the expression profiles of ATP-binding cassette transporters yields an improved drug-discovery database.

Orina JN, Calcagno AM, Wu CP, Varma S, Shih J, Lin M, Eichler G, Weinstein JN, Pommier Y, Ambudkar SV, Gottesman MM, Gillet JP. Orina JN, et al. Among authors: varma s. Mol Cancer Ther. 2009 Jul;8(7):2057-66. doi: 10.1158/1535-7163.MCT-09-0256. Epub 2009 Jul 7. Mol Cancer Ther. 2009. PMID: 19584229 Free PMC article.

7

Genome-wide analysis of novel splice variants induced by topoisomerase I poisoning shows preferential occurrence in genes encoding splicing factors.

Solier S, Barb J, Zeeberg BR, Varma S, Ryan MC, Kohn KW, Weinstein JN, Munson PJ, Pommier Y. Solier S, et al. Among authors: varma s. Cancer Res. 2010 Oct 15;70(20):8055-65. doi: 10.1158/0008-5472.CAN-10-2491. Epub 2010 Sep 3. Cancer Res. 2010. PMID: 20817775 Free PMC article.

8

Exclusion of the 750-kb genetically unstable region at Xq27 as a candidate locus for prostate malignancy in HPCX1-linked families.

Kouprina N, Lee NC, Pavlicek A, Samoshkin A, Kim JH, Lee HS, Varma S, Reinhold WC, Otstot J, Solomon G, Davis S, Meltzer PS, Schleutker J, Larionov V. Kouprina N, et al. Among authors: varma s. Genes Chromosomes Cancer. 2012 Oct;51(10):933-48. doi: 10.1002/gcc.21977. Epub 2012 Jun 26. Genes Chromosomes Cancer. 2012. PMID: 22733720 Free PMC article.

9

CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set.

Reinhold WC, Sunshine M, Liu H, Varma S, Kohn KW, Morris J, Doroshow J, Pommier Y. Reinhold WC, et al. Among authors: varma s. Cancer Res. 2012 Jul 15;72(14):3499-511. doi: 10.1158/0008-5472.CAN-12-1370. Cancer Res. 2012. PMID: 22802077 Free PMC article.

10

Putative DNA/RNA helicase Schlafen-11 (SLFN11) sensitizes cancer cells to DNA-damaging agents.

Zoppoli G, Regairaz M, Leo E, Reinhold WC, Varma S, Ballestrero A, Doroshow JH, Pommier Y. Zoppoli G, et al. Among authors: varma s. Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):15030-5. doi: 10.1073/pnas.1205943109. Epub 2012 Aug 27. Proc Natl Acad Sci U S A. 2012. PMID: 22927417 Free PMC article.

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