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Neoantigen prediction and computational perspectives towards clinical benefit: recommendations from the ESMO Precision Medicine Working Group.
De Mattos-Arruda L, Vazquez M, Finotello F, Lepore R, Porta E, Hundal J, Amengual-Rigo P, Ng CKY, Valencia A, Carrillo J, Chan TA, Guallar V, McGranahan N, Blanco J, Griffith M. De Mattos-Arruda L, et al. Among authors: vazquez m. Ann Oncol. 2020 Aug;31(8):978-990. doi: 10.1016/j.annonc.2020.05.008. Epub 2020 Jun 28. Ann Oncol. 2020. PMID: 32610166 Free PMC article.
Chapter 14: Cancer genome analysis.
Vazquez M, de la Torre V, Valencia A. Vazquez M, et al. PLoS Comput Biol. 2012;8(12):e1002824. doi: 10.1371/journal.pcbi.1002824. Epub 2012 Dec 27. PLoS Comput Biol. 2012. PMID: 23300415 Free PMC article.
Immune analysis of lymph nodes in relation to the presence or absence of tumor infiltrating lymphocytes in triple-negative breast cancer.
Quintana Á, Peg V, Prat A, Moliné T, Villacampa G, Paré L, Galván P, Dientsmann R, Schmid P, Curigliano G, Muñoz-Couselo E, Perez-García J, Marti M, Blanco-Heredia J, Anjos CD, Vazquez M, De Mattos-Arruda L, Cortés J. Quintana Á, et al. Among authors: vazquez m. Eur J Cancer. 2021 May;148:134-145. doi: 10.1016/j.ejca.2021.01.037. Epub 2021 Mar 17. Eur J Cancer. 2021. PMID: 33743482 Free article.
ExTRI: Extraction of transcription regulation interactions from literature.
Vazquez M, Krallinger M, Leitner F, Kuiper M, Valencia A, Laegreid A. Vazquez M, et al. Biochim Biophys Acta Gene Regul Mech. 2022 Jan;1865(1):194778. doi: 10.1016/j.bbagrm.2021.194778. Epub 2021 Dec 5. Biochim Biophys Acta Gene Regul Mech. 2022. PMID: 34875418 Free article.
Computational approaches to identify functional genetic variants in cancer genomes.
Gonzalez-Perez A, Mustonen V, Reva B, Ritchie GR, Creixell P, Karchin R, Vazquez M, Fink JL, Kassahn KS, Pearson JV, Bader GD, Boutros PC, Muthuswamy L, Ouellette BF, Reimand J, Linding R, Shibata T, Valencia A, Butler A, Dronov S, Flicek P, Shannon NB, Carter H, Ding L, Sander C, Stuart JM, Stein LD, Lopez-Bigas N; International Cancer Genome Consortium Mutation Pathways and Consequences Subgroup of the Bioinformatics Analyses Working Group. Gonzalez-Perez A, et al. Among authors: vazquez m. Nat Methods. 2013 Aug;10(8):723-9. doi: 10.1038/nmeth.2562. Nat Methods. 2013. PMID: 23900255 Free PMC article.
CheNER: chemical named entity recognizer.
Usié A, Alves R, Solsona F, Vázquez M, Valencia A. Usié A, et al. Among authors: vazquez m. Bioinformatics. 2014 Apr 1;30(7):1039-40. doi: 10.1093/bioinformatics/btt639. Epub 2013 Nov 13. Bioinformatics. 2014. PMID: 24227678 Free PMC article.
2,071 results