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Modeling alternative splicing variants from RNA-Seq data with isoform graphs.
Beretta S, Bonizzoni P, Vedova GD, Pirola Y, Rizzi R. Beretta S, et al. Among authors: vedova gd. J Comput Biol. 2014 Jan;21(1):16-40. doi: 10.1089/cmb.2013.0112. Epub 2013 Nov 7. J Comput Biol. 2014. PMID: 24200390 Free PMC article.
LSG: An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly.
Bonizzoni P, Vedova GD, Pirola Y, Previtali M, Rizzi R. Bonizzoni P, et al. Among authors: vedova gd. J Comput Biol. 2016 Mar;23(3):137-49. doi: 10.1089/cmb.2015.0172. J Comput Biol. 2016. PMID: 26953874
FSG: Fast String Graph Construction for De Novo Assembly.
Bonizzoni P, Vedova GD, Pirola Y, Previtali M, Rizzi R. Bonizzoni P, et al. Among authors: vedova gd. J Comput Biol. 2017 Oct;24(10):953-968. doi: 10.1089/cmb.2017.0089. Epub 2017 Jul 17. J Comput Biol. 2017. PMID: 28715269
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events.
Denti L, Rizzi R, Beretta S, Vedova GD, Previtali M, Bonizzoni P. Denti L, et al. Among authors: vedova gd. BMC Bioinformatics. 2018 Nov 20;19(1):444. doi: 10.1186/s12859-018-2436-3. BMC Bioinformatics. 2018. PMID: 30458725 Free PMC article.
Triplet-based similarity score for fully multi-labeled trees with poly-occurring labels.
Ciccolella S, Bernardini G, Denti L, Bonizzoni P, Previtali M, Vedova GD. Ciccolella S, et al. Among authors: vedova gd. Bioinformatics. 2020 Jul 30:btaa676. doi: 10.1093/bioinformatics/btaa676. Online ahead of print. Bioinformatics. 2020. PMID: 32730595
Oral bisphosphonates do not increase the risk of severe upper gastrointestinal complications: a nested case-control study.
Ghirardi A, Scotti L, Vedova GD, D'Oro LC, Lapi F, Cipriani F, Caputi AP, Vaccheri A, Gregori D, Gesuita R, Vestri A, Staniscia T, Mazzaglia G, Corrao G; AIFA-BEST Investigators. Ghirardi A, et al. Among authors: vedova gd. BMC Gastroenterol. 2014 Jan 7;14:5. doi: 10.1186/1471-230X-14-5. BMC Gastroenterol. 2014. PMID: 24397769 Free PMC article.
Tools and data services registry: a community effort to document bioinformatics resources.
Ison J, Rapacki K, Ménager H, Kalaš M, Rydza E, Chmura P, Anthon C, Beard N, Berka K, Bolser D, Booth T, Bretaudeau A, Brezovsky J, Casadio R, Cesareni G, Coppens F, Cornell M, Cuccuru G, Davidsen K, Vedova GD, Dogan T, Doppelt-Azeroual O, Emery L, Gasteiger E, Gatter T, Goldberg T, Grosjean M, Grüning B, Helmer-Citterich M, Ienasescu H, Ioannidis V, Jespersen MC, Jimenez R, Juty N, Juvan P, Koch M, Laibe C, Li JW, Licata L, Mareuil F, Mičetić I, Friborg RM, Moretti S, Morris C, Möller S, Nenadic A, Peterson H, Profiti G, Rice P, Romano P, Roncaglia P, Saidi R, Schafferhans A, Schwämmle V, Smith C, Sperotto MM, Stockinger H, Vařeková RS, Tosatto SC, de la Torre V, Uva P, Via A, Yachdav G, Zambelli F, Vriend G, Rost B, Parkinson H, Løngreen P, Brunak S. Ison J, et al. Among authors: vedova gd. Nucleic Acids Res. 2016 Jan 4;44(D1):D38-47. doi: 10.1093/nar/gkv1116. Epub 2015 Nov 3. Nucleic Acids Res. 2016. PMID: 26538599 Free PMC article.
Does Relaxing the Infinite Sites Assumption Give Better Tumor Phylogenies? An ILP-Based Comparative Approach.
Bonizzoni P, Ciccolella S, Vedova GD, Soto M. Bonizzoni P, et al. Among authors: vedova gd. IEEE/ACM Trans Comput Biol Bioinform. 2019 Sep-Oct;16(5):1410-1423. doi: 10.1109/TCBB.2018.2865729. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 31603766
(Z)-8-heptadecene from infested cells reduces the reproduction of Varroa destructor under laboratory conditions.
Nazzi F, Milani N, Vedova GD. Nazzi F, et al. Among authors: vedova gd. J Chem Ecol. 2002 Nov;28(11):2181-90. doi: 10.1023/a:1021041130593. J Chem Ecol. 2002. PMID: 12523561
Recurrent abdominal pain and lactose intolerance.
Bianchi Porro G, Petrillo M, Parente F, Sangaletti O, Vedova GD. Bianchi Porro G, et al. Among authors: vedova gd. Br Med J (Clin Res Ed). 1981 Aug 15;283(6289):501. doi: 10.1136/bmj.283.6289.501. Br Med J (Clin Res Ed). 1981. PMID: 6790037 Free PMC article. Clinical Trial. No abstract available.
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