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Criteria for evaluating protein structures derived from comparative modeling.
Venclovas C, Zemla A, Fidelis K, Moult J. Venclovas C, et al. Proteins. 1997;Suppl 1:7-13. doi: 10.1002/(sici)1097-0134(1997)1+<7::aid-prot3>3.3.co;2-c. Proteins. 1997. PMID: 9485490
Numerical criteria for the evaluation of ab initio predictions of protein structure.
Zemla A, Venclovas C, Reinhardt A, Fidelis K, Hubbard TJ. Zemla A, et al. Proteins. 1997;Suppl 1:140-50. doi: 10.1002/(sici)1097-0134(1997)1+<140::aid-prot19>3.3.co;2-y. Proteins. 1997. PMID: 9485506
A sliding clamp model for the Rad1 family of cell cycle checkpoint proteins.
Thelen MP, Venclovas C, Fidelis K. Thelen MP, et al. Cell. 1999 Mar 19;96(6):769-70. doi: 10.1016/s0092-8674(00)80587-5. Cell. 1999. PMID: 10102265 No abstract available.
Processing and analysis of CASP3 protein structure predictions.
Zemla A, Venclovas C, Moult J, Fidelis K. Zemla A, et al. Proteins. 1999;Suppl 3:22-9. doi: 10.1002/(sici)1097-0134(1999)37:3+<22::aid-prot5>3.3.co;2-n. Proteins. 1999. PMID: 10526349
Some measures of comparative performance in the three CASPs.
Venclovas C, Zemla A, Fidelis K, Moult J. Venclovas C, et al. Proteins. 1999;Suppl 3:231-7. doi: 10.1002/(sici)1097-0134(1999)37:3+<231::aid-prot30>3.3.co;2-t. Proteins. 1999. PMID: 10526374
Structure-based sequence alignment for the beta-trefoil subdomain of the clostridial neurotoxin family provides residue level information about the putative ganglioside binding site.
Ginalski K, Venclovas C, Lesyng B, Fidelis K. Ginalski K, et al. FEBS Lett. 2000 Sep 29;482(1-2):119-24. doi: 10.1016/s0014-5793(00)01954-2. FEBS Lett. 2000. PMID: 11018534
The beta-trefoil subdomain of the C-terminal part of the heavy chain (H(C)), responsible for ganglioside binding, is the most divergent region in clostridial neurotoxins with sequence identity as low as 15%. ...
The beta-trefoil subdomain of the C-terminal part of the heavy chain (H(C)), responsible for ganglioside binding, is the most …
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