Vendruscolo M - Search Results

1

Looking at structure, stability, and evolution of proteins through the principal eigenvector of contact matrices and hydrophobicity profiles.

Bastolla U, Porto M, Roman HE, Vendruscolo M. Bastolla U, et al. Among authors: vendruscolo m. Gene. 2005 Mar 14;347(2):219-30. doi: 10.1016/j.gene.2004.12.015. Gene. 2005. PMID: 15777696

2

Transition state contact orders correlate with protein folding rates.

Paci E, Lindorff-Larsen K, Dobson CM, Karplus M, Vendruscolo M. Paci E, et al. Among authors: vendruscolo m. J Mol Biol. 2005 Sep 23;352(3):495-500. doi: 10.1016/j.jmb.2005.06.081. J Mol Biol. 2005. PMID: 16120445

3

Connectivity of neutral networks, overdispersion, and structural conservation in protein evolution.

Bastolla U, Porto M, Eduardo Roman MH, Vendruscolo MH. Bastolla U, et al. Among authors: vendruscolo mh. J Mol Evol. 2003 Mar;56(3):243-54. doi: 10.1007/s00239-002-2350-0. J Mol Evol. 2003. PMID: 12612828

4

A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank.

Bastolla U, Porto M, Roman HE, Vendruscolo M. Bastolla U, et al. Among authors: vendruscolo m. BMC Evol Biol. 2006 May 31;6:43. doi: 10.1186/1471-2148-6-43. BMC Evol Biol. 2006. PMID: 16737532 Free PMC article.

5

Principal eigenvector of contact matrices and hydrophobicity profiles in proteins.

Bastolla U, Porto M, Roman HE, Vendruscolo M. Bastolla U, et al. Among authors: vendruscolo m. Proteins. 2005 Jan 1;58(1):22-30. doi: 10.1002/prot.20240. Proteins. 2005. PMID: 15523667

6

Lack of self-averaging in neutral evolution of proteins.

Bastolla U, Porto M, Roman HE, Vendruscolo M. Bastolla U, et al. Among authors: vendruscolo m. Phys Rev Lett. 2002 Nov 11;89(20):208101. doi: 10.1103/PhysRevLett.89.208101. Epub 2002 Oct 24. Phys Rev Lett. 2002. PMID: 12443510

7

Statistical properties of neutral evolution.

Bastolla U, Porto M, Roman HE, Vendruscolo M. Bastolla U, et al. Among authors: vendruscolo m. J Mol Evol. 2003;57 Suppl 1:S103-19. doi: 10.1007/s00239-003-0013-4. J Mol Evol. 2003. PMID: 15008407

8

A stochastic method for the reconstruction of protein structures from one-dimensional structural profiles.

Wolff K, Vendruscolo M, Porto M. Wolff K, et al. Among authors: vendruscolo m. Gene. 2008 Oct 1;422(1-2):47-51. doi: 10.1016/j.gene.2008.06.004. Epub 2008 Jun 6. Gene. 2008. PMID: 18577428

9

Neutral evolution of model proteins: diffusion in sequence space and overdispersion.

Bastolla U, Roman HE, Vendruscolo M. Bastolla U, et al. Among authors: vendruscolo m. J Theor Biol. 1999 Sep 7;200(1):49-64. doi: 10.1006/jtbi.1999.0975. J Theor Biol. 1999. PMID: 10479539

10

Toward an energy function for the contact map representation of proteins.

Park K, Vendruscolo M, Domany E. Park K, et al. Among authors: vendruscolo m. Proteins. 2000 Aug 1;40(2):237-48. Proteins. 2000. PMID: 10842339

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