Vijay-Shanker K - Search Results

1

Literature mining and database annotation of protein phosphorylation using a rule-based system.

Hu ZZ, Narayanaswamy M, Ravikumar KE, Vijay-Shanker K, Wu CH. Hu ZZ, et al. Bioinformatics. 2005 Jun 1;21(11):2759-65. doi: 10.1093/bioinformatics/bti390. Epub 2005 Apr 6. Bioinformatics. 2005. PMID: 15814565

2

eGARD: Extracting associations between genomic anomalies and drug responses from text.

Mahmood ASMA, Rao S, McGarvey P, Wu C, Madhavan S, Vijay-Shanker K. Mahmood ASMA, et al. Among authors: vijay shanker k. PLoS One. 2017 Dec 20;12(12):e0189663. doi: 10.1371/journal.pone.0189663. eCollection 2017. PLoS One. 2017. PMID: 29261751 Free PMC article.

3

Analysis of Protein Phosphorylation and Its Functional Impact on Protein-Protein Interactions via Text Mining of the Scientific Literature.

Wang Q, Ross KE, Huang H, Ren J, Li G, Vijay-Shanker K, Wu CH, Arighi CN. Wang Q, et al. Methods Mol Biol. 2017;1558:213-232. doi: 10.1007/978-1-4939-6783-4_10. Methods Mol Biol. 2017. PMID: 28150240 Free PMC article.

4

miRiaD: A Text Mining Tool for Detecting Associations of microRNAs with Diseases.

Gupta S, Ross KE, Tudor CO, Wu CH, Schmidt CJ, Vijay-Shanker K. Gupta S, et al. J Biomed Semantics. 2016 Apr 29;7(1):9. doi: 10.1186/s13326-015-0044-y. J Biomed Semantics. 2016. PMID: 27216254 Free PMC article.

5

RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information.

Torii M, Arighi CN, Li G, Wang Q, Wu CH, Vijay-Shanker K. Torii M, et al. IEEE/ACM Trans Comput Biol Bioinform. 2015 Jan-Feb;12(1):17-29. doi: 10.1109/TCBB.2014.2372765. IEEE/ACM Trans Comput Biol Bioinform. 2015. PMID: 26357075 Free PMC article.

6

An online literature mining tool for protein phosphorylation.

Yuan X, Hu ZZ, Wu HT, Torii M, Narayanaswamy M, Ravikumar KE, Vijay-Shanker K, Wu CH. Yuan X, et al. Bioinformatics. 2006 Jul 1;22(13):1668-9. doi: 10.1093/bioinformatics/btl159. Epub 2006 Apr 27. Bioinformatics. 2006. PMID: 16644790

7

eGIFT: mining gene information from the literature.

Tudor CO, Schmidt CJ, Vijay-Shanker K. Tudor CO, et al. BMC Bioinformatics. 2010 Aug 9;11:418. doi: 10.1186/1471-2105-11-418. BMC Bioinformatics. 2010. PMID: 20696046 Free PMC article.

8

Scalable Text Mining Assisted Curation of Post-Translationally Modified Proteoforms in the Protein Ontology.

Ross KE, Natale DA, Arighi C, Chen SC, Huang H, Li G, Ren J, Wang M, Vijay-Shanker K, Wu CH. Ross KE, et al. Among authors: vijay shanker k. CEUR Workshop Proc. 2016 Aug;1747:http://ceur-ws.org/Vol-1747/BIT103_ICBO2016.pdf. Epub 2016 Nov 29. CEUR Workshop Proc. 2016. PMID: 28706471 Free PMC article.

9

iPTMnet: an integrated resource for protein post-translational modification network discovery.

Huang H, Arighi CN, Ross KE, Ren J, Li G, Chen SC, Wang Q, Cowart J, Vijay-Shanker K, Wu CH. Huang H, et al. Among authors: vijay shanker k. Nucleic Acids Res. 2018 Jan 4;46(D1):D542-D550. doi: 10.1093/nar/gkx1104. Nucleic Acids Res. 2018. PMID: 29145615 Free PMC article.

10

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.

Torii M, Li G, Li Z, Oughtred R, Diella F, Celen I, Arighi CN, Huang H, Vijay-Shanker K, Wu CH. Torii M, et al. Database (Oxford). 2014 Aug 13;2014:bau081. doi: 10.1093/database/bau081. Print 2014. Database (Oxford). 2014. PMID: 25122463 Free PMC article.

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