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Comparative genomics of mammalian hibernators using gene networks.
Villanueva-Cañas JL, Faherty SL, Yoder AD, Albà MM. Villanueva-Cañas JL, et al. Integr Comp Biol. 2014 Sep;54(3):452-62. doi: 10.1093/icb/icu048. Epub 2014 May 31. Integr Comp Biol. 2014. PMID: 24881044
Gene Expression Profiling in the Hibernating Primate, Cheirogaleus Medius.
Faherty SL, Villanueva-Cañas JL, Klopfer PH, Albà MM, Yoder AD. Faherty SL, et al. Among authors: villanueva canas jl. Genome Biol Evol. 2016 Aug 25;8(8):2413-26. doi: 10.1093/gbe/evw163. Genome Biol Evol. 2016. PMID: 27412611 Free PMC article.
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx.
Abascal F, Corvelo A, Cruz F, Villanueva-Cañas JL, Vlasova A, Marcet-Houben M, Martínez-Cruz B, Cheng JY, Prieto P, Quesada V, Quilez J, Li G, García F, Rubio-Camarillo M, Frias L, Ribeca P, Capella-Gutiérrez S, Rodríguez JM, Câmara F, Lowy E, Cozzuto L, Erb I, Tress ML, Rodriguez-Ales JL, Ruiz-Orera J, Reverter F, Casas-Marce M, Soriano L, Arango JR, Derdak S, Galán B, Blanc J, Gut M, Lorente-Galdos B, Andrés-Nieto M, López-Otín C, Valencia A, Gut I, García JL, Guigó R, Murphy WJ, Ruiz-Herrera A, Marques-Bonet T, Roma G, Notredame C, Mailund T, Albà MM, Gabaldón T, Alioto T, Godoy JA. Abascal F, et al. Among authors: villanueva canas jl. Genome Biol. 2016 Dec 14;17(1):251. doi: 10.1186/s13059-016-1090-1. Genome Biol. 2016. PMID: 27964752 Free PMC article.
Transcriptomics in the wild: Hibernation physiology in free-ranging dwarf lemurs.
Faherty SL, Villanueva-Cañas JL, Blanco MB, Albà MM, Yoder AD. Faherty SL, et al. Among authors: villanueva canas jl. Mol Ecol. 2018 Feb;27(3):709-722. doi: 10.1111/mec.14483. Epub 2018 Jan 29. Mol Ecol. 2018. PMID: 29319912
Translation of neutrally evolving peptides provides a basis for de novo gene evolution.
Ruiz-Orera J, Verdaguer-Grau P, Villanueva-Cañas JL, Messeguer X, Albà MM. Ruiz-Orera J, et al. Among authors: villanueva canas jl. Nat Ecol Evol. 2018 May;2(5):890-896. doi: 10.1038/s41559-018-0506-6. Epub 2018 Mar 19. Nat Ecol Evol. 2018. PMID: 29556078
Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila.
Rech GE, Bogaerts-Márquez M, Barrón MG, Merenciano M, Villanueva-Cañas JL, Horváth V, Fiston-Lavier AS, Luyten I, Venkataram S, Quesneville H, Petrov DA, González J. Rech GE, et al. Among authors: villanueva canas jl. PLoS Genet. 2019 Feb 12;15(2):e1007900. doi: 10.1371/journal.pgen.1007900. eCollection 2019 Feb. PLoS Genet. 2019. PMID: 30753202 Free PMC article.
Diverse families of transposable elements affect the transcriptional regulation of stress-response genes in Drosophila melanogaster.
Villanueva-Cañas JL, Horvath V, Aguilera L, González J. Villanueva-Cañas JL, et al. Nucleic Acids Res. 2019 Jul 26;47(13):6842-6857. doi: 10.1093/nar/gkz490. Nucleic Acids Res. 2019. PMID: 31175824 Free PMC article.
Evolution of new proteins from translated sORFs in long non-coding RNAs.
Ruiz-Orera J, Villanueva-Cañas JL, Albà MM. Ruiz-Orera J, et al. Among authors: villanueva canas jl. Exp Cell Res. 2020 Jun 1;391(1):111940. doi: 10.1016/j.yexcr.2020.111940. Epub 2020 Mar 7. Exp Cell Res. 2020. PMID: 32156600 Review.
Hormone-control regions mediate steroid receptor-dependent genome organization.
Le Dily F, Vidal E, Cuartero Y, Quilez J, Nacht AS, Vicent GP, Carbonell-Caballero J, Sharma P, Villanueva-Cañas JL, Ferrari R, De Llobet LI, Verde G, Wright RHG, Beato M. Le Dily F, et al. Among authors: villanueva canas jl. Genome Res. 2019 Jan;29(1):29-39. doi: 10.1101/gr.243824.118. Epub 2018 Dec 14. Genome Res. 2019. PMID: 30552103 Free PMC article.
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