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Mitochondrial phylogenomics of modern and ancient equids.
Vilstrup JT, Seguin-Orlando A, Stiller M, Ginolhac A, Raghavan M, Nielsen SC, Weinstock J, Froese D, Vasiliev SK, Ovodov ND, Clary J, Helgen KM, Fleischer RC, Cooper A, Shapiro B, Orlando L. Vilstrup JT, et al. PLoS One. 2013;8(2):e55950. doi: 10.1371/journal.pone.0055950. Epub 2013 Feb 20. PLoS One. 2013. PMID: 23437078 Free PMC article.
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.
Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E. Orlando L, et al. Among authors: Vilstrup JT. Nature. 2013 Jul 4;499(7456):74-8. doi: 10.1038/nature12323. Epub 2013 Jun 26. Nature. 2013. PMID: 23803765
Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae.
Vilstrup JT, Ho SY, Foote AD, Morin PA, Kreb D, Krützen M, Parra GJ, Robertson KM, de Stephanis R, Verborgh P, Willerslev E, Orlando L, Gilbert MT. Vilstrup JT, et al. BMC Evol Biol. 2011 Mar 10;11:65. doi: 10.1186/1471-2148-11-65. BMC Evol Biol. 2011. PMID: 21392378 Free PMC article.
Mitochondrial genomes reveal the extinct Hippidion as an outgroup to all living equids.
Der Sarkissian C, Vilstrup JT, Schubert M, Seguin-Orlando A, Eme D, Weinstock J, Alberdi MT, Martin F, Lopez PM, Prado JL, Prieto A, Douady CJ, Stafford TW, Willerslev E, Orlando L. Der Sarkissian C, et al. Among authors: Vilstrup JT. Biol Lett. 2015 Mar;11(3):20141058. doi: 10.1098/rsbl.2014.1058. Biol Lett. 2015. PMID: 25762573 Free PMC article.
Synergistic roles of climate warming and human occupation in Patagonian megafaunal extinctions during the Last Deglaciation.
Metcalf JL, Turney C, Barnett R, Martin F, Bray SC, Vilstrup JT, Orlando L, Salas-Gismondi R, Loponte D, Medina M, De Nigris M, Civalero T, Fernández PM, Gasco A, Duran V, Seymour KL, Otaola C, Gil A, Paunero R, Prevosti FJ, Bradshaw CJ, Wheeler JC, Borrero L, Austin JJ, Cooper A. Metcalf JL, et al. Among authors: Vilstrup JT. Sci Adv. 2016 Jun 17;2(6):e1501682. doi: 10.1126/sciadv.1501682. eCollection 2016 Jun. Sci Adv. 2016. PMID: 27386563 Free PMC article.
Speciation with gene flow in equids despite extensive chromosomal plasticity.
Jónsson H, Schubert M, Seguin-Orlando A, Ginolhac A, Petersen L, Fumagalli M, Albrechtsen A, Petersen B, Korneliussen TS, Vilstrup JT, Lear T, Myka JL, Lundquist J, Miller DC, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, Stagegaard J, Strauss G, Bertelsen MF, Sicheritz-Ponten T, Antczak DF, Bailey E, Nielsen R, Willerslev E, Orlando L. Jónsson H, et al. Among authors: Vilstrup JT. Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18655-60. doi: 10.1073/pnas.1412627111. Epub 2014 Dec 1. Proc Natl Acad Sci U S A. 2014. PMID: 25453089 Free PMC article.
True single-molecule DNA sequencing of a pleistocene horse bone.
Orlando L, Ginolhac A, Raghavan M, Vilstrup J, Rasmussen M, Magnussen K, Steinmann KE, Kapranov P, Thompson JF, Zazula G, Froese D, Moltke I, Shapiro B, Hofreiter M, Al-Rasheid KA, Gilbert MT, Willerslev E. Orlando L, et al. Among authors: Vilstrup J. Genome Res. 2011 Oct;21(10):1705-19. doi: 10.1101/gr.122747.111. Epub 2011 Jul 29. Genome Res. 2011. PMID: 21803858 Free PMC article.
Improving the performance of true single molecule sequencing for ancient DNA.
Ginolhac A, Vilstrup J, Stenderup J, Rasmussen M, Stiller M, Shapiro B, Zazula G, Froese D, Steinmann KE, Thompson JF, Al-Rasheid KA, Gilbert TM, Willerslev E, Orlando L. Ginolhac A, et al. Among authors: Vilstrup J. BMC Genomics. 2012 May 10;13:177. doi: 10.1186/1471-2164-13-177. BMC Genomics. 2012. PMID: 22574620 Free PMC article.
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