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UFBoot2: Improving the Ultrafast Bootstrap Approximation.
Hoang DT, Chernomor O, von Haeseler A, Minh BQ, Vinh LS. Hoang DT, et al. Among authors: vinh ls. Mol Biol Evol. 2018 Feb 1;35(2):518-522. doi: 10.1093/molbev/msx281. Mol Biol Evol. 2018. PMID: 29077904 Free PMC article.
MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation.
Hoang DT, Vinh LS, Flouri T, Stamatakis A, von Haeseler A, Minh BQ. Hoang DT, et al. Among authors: vinh ls. BMC Evol Biol. 2018 Feb 2;18(1):11. doi: 10.1186/s12862-018-1131-3. BMC Evol Biol. 2018. PMID: 29390973 Free PMC article.
IQPNNI: moving fast through tree space and stopping in time.
Vinh le S, Von Haeseler A. Vinh le S, et al. Mol Biol Evol. 2004 Aug;21(8):1565-71. doi: 10.1093/molbev/msh176. Epub 2004 May 26. Mol Biol Evol. 2004. PMID: 15163768
Random Tree-Puzzle leads to the Yule-Harding distribution.
Vinh le S, Fuehrer A, von Haeseler A. Vinh le S, et al. Mol Biol Evol. 2011 Feb;28(2):873-7. doi: 10.1093/molbev/msq212. Epub 2010 Aug 12. Mol Biol Evol. 2011. PMID: 20705907
pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies.
Minh BQ, Vinh le S, von Haeseler A, Schmidt HA. Minh BQ, et al. Among authors: vinh le s. Bioinformatics. 2005 Oct 1;21(19):3794-6. doi: 10.1093/bioinformatics/bti594. Epub 2005 Jul 26. Bioinformatics. 2005. PMID: 16046495
Shortest triplet clustering: reconstructing large phylogenies using representative sets.
Vinh le S, von Haeseler A. Vinh le S, et al. BMC Bioinformatics. 2005 Apr 8;6:92. doi: 10.1186/1471-2105-6-92. BMC Bioinformatics. 2005. PMID: 15819989 Free PMC article.
Whole genome analysis of a Vietnamese trio.
Hai DT, Thanh ND, Trang PT, Quang le S, Hang PT, Cuong DC, Phuc HK, Duc NH, Dong do D, Minh BQ, Son PB, Vinh le S. Hai DT, et al. Among authors: vinh le s. J Biosci. 2015 Mar;40(1):113-24. doi: 10.1007/s12038-015-9501-0. J Biosci. 2015. PMID: 25740146
Pairwise alignment with rearrangements.
Vinh le S, VarĂ³n A, Wheeler WC. Vinh le S, et al. Genome Inform. 2006;17(2):141-51. Genome Inform. 2006. PMID: 17503387
FLAVI: An Amino Acid Substitution Model for Flaviviruses.
Le TK, Vinh LS. Le TK, et al. Among authors: vinh ls. J Mol Evol. 2020 Jul;88(5):445-452. doi: 10.1007/s00239-020-09943-3. Epub 2020 Apr 30. J Mol Evol. 2020. PMID: 32356020