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2000 3
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Page 1
Did you mean lizcano ja[Author] (8 results)?
The functional landscape of the human phosphoproteome.
Ochoa D, Jarnuczak AF, Viéitez C, Gehre M, Soucheray M, Mateus A, Kleefeldt AA, Hill A, Garcia-Alonso L, Stein F, Krogan NJ, Savitski MM, Swaney DL, Vizcaíno JA, Noh KM, Beltrao P. Ochoa D, et al. Among authors: vizcaino ja. Nat Biotechnol. 2020 Mar;38(3):365-373. doi: 10.1038/s41587-019-0344-3. Epub 2019 Dec 9. Nat Biotechnol. 2020. PMID: 31819260 Free PMC article.
π-HuB: the proteomic navigator of the human body.
He F, Aebersold R, Baker MS, Bian X, Bo X, Chan DW, Chang C, Chen L, Chen X, Chen YJ, Cheng H, Collins BC, Corrales F, Cox J, E W, Van Eyk JE, Fan J, Faridi P, Figeys D, Gao GF, Gao W, Gao ZH, Goda K, Goh WWB, Gu D, Guo C, Guo T, He Y, Heck AJR, Hermjakob H, Hunter T, Iyer NG, Jiang Y, Jimenez CR, Joshi L, Kelleher NL, Li M, Li Y, Lin Q, Liu CH, Liu F, Liu GH, Liu Y, Liu Z, Low TY, Lu B, Mann M, Meng A, Moritz RL, Nice E, Ning G, Omenn GS, Overall CM, Palmisano G, Peng Y, Pineau C, Poon TCW, Purcell AW, Qiao J, Reddel RR, Robinson PJ, Roncada P, Sander C, Sha J, Song E, Srivastava S, Sun A, Sze SK, Tang C, Tang L, Tian R, Vizcaíno JA, Wang C, Wang C, Wang X, Wang X, Wang Y, Weiss T, Wilhelm M, Winkler R, Wollscheid B, Wong L, Xie L, Xie W, Xu T, Xu T, Yan L, Yang J, Yang X, Yates J, Yun T, Zhai Q, Zhang B, Zhang H, Zhang L, Zhang L, Zhang P, Zhang Y, Zheng YZ, Zhong Q, Zhu Y; π-HuB Consortium. He F, et al. Among authors: vizcaino ja. Nature. 2024 Dec;636(8042):322-331. doi: 10.1038/s41586-024-08280-5. Epub 2024 Dec 11. Nature. 2024. PMID: 39663494 Free PMC article. Review.
Expanding the human proteome with microproteins and peptideins.
Deutsch EW, Kok LW, Mudge JM, Valls CF, Jungreis I, Ruiz-Orera J, Sun Z, Kusebauch U, Fierro-Monti I, Abelin JG, Alba MM, Aspden JL, Bandyopadhyay S, Banerjee K, Baranov PV, Bazzini AA, Bourassa F, Bruford EA, Calviello L, Carr SA, Carvunis AR, Chothani S, Clauwaert J, Dean K, Faridi P, Frankish A, Goodale A, Green T, Hubner N, Ingolia NT, Kellis M, Magrane M, Martin MJ, Martinez TF, Menschaert G, Ohler U, Orchard S, Potter A, Rackham OJL, Rees MG, Root DE, Roth JA, Roucou X, Sialana FJ, Slavoff SA, Świrski MI, Tierney JAS, Trifiro FA, Valen E, Vasylieva V, Wacholder A, Wang S, Wang L, Weissman JS, Wu W, Xie Z, Choudhary JS, Bassani-Sternberg M, Vizcaíno JA, Ternette N, Brunet MA, Moritz RL, Prensner JR, van Heesch S. Deutsch EW, et al. Among authors: vizcaino ja. Nature. 2026 Jun;654(8119):813-825. doi: 10.1038/s41586-026-10459-x. Epub 2026 May 6. Nature. 2026. PMID: 42092140 Free PMC article.
The PRIDE database at 20 years: 2025 update.
Perez-Riverol Y, Bandla C, Kundu DJ, Kamatchinathan S, Bai J, Hewapathirana S, John NS, Prakash A, Walzer M, Wang S, Vizcaíno JA. Perez-Riverol Y, et al. Among authors: vizcaino ja. Nucleic Acids Res. 2025 Jan 6;53(D1):D543-D553. doi: 10.1093/nar/gkae1011. Nucleic Acids Res. 2025. PMID: 39494541 Free PMC article.
Proteomics data visualisation.
Vizcaíno JA, Barsnes H, Hermjakob H. Vizcaíno JA, et al. Proteomics. 2015 Apr;15(8):1339-40. doi: 10.1002/pmic.201570063. Proteomics. 2015. PMID: 25854789 No abstract available.
Establishing the ELIXIR Microbiome Community.
Finn RD, Balech B, Burgin J, Chua P, Corre E, Cox CJ, Donati C, Dos Santos VM, Fosso B, Hancock J, Heil KF, Ishaque N, Kale V, Kunath BJ, Médigue C, Nogueira T, Pafilis E, Pesole G, Richardson L, Santamaria M, Strepis N, Van Den Bossche T, Vizcaíno JA, Zafeiropoulos H, Willassen NP, Pelletier E, Batut B. Finn RD, et al. Among authors: vizcaino ja. F1000Res. 2025 Sep 8;13:ELIXIR-50. doi: 10.12688/f1000research.144515.2. eCollection 2024. F1000Res. 2025. PMID: 40970218 Free PMC article.
Translon: a single term for translated regions.
Świrski MI, Tierney JAS, Albà MM, Andreev DE, Aspden JL, Atkins JF, Bassani-Sternberg M, Berry MJ, Biffo S, Boris-Lawrie K, Borodovsky M, Brierley I, Brook M, Brunet MA, Bujnicki JM, Caliskan N, Calviello L, Carvunis AR, Cate JHD, Cenik C, Chang KY, Chen Y, Chothani S, Choudhary JS, Clark PL, Clauwaert J, Cooley L, Dassi E, Dean K, Diaz JJ, Dieterich C, Dikstein R, Dinman JD, Dmitriev SE, Dontsova OA, Dunham CM, Eswarappa SM, Farabaugh PJ, Faridi P, Fierro-Monti I, Firth AE, Gatfield D, Gebauer F, Gelfand MS, Gray NK, Green R, Hill CH, Hou YM, Hübner N, Ignatova Z, Ivanov P, Iwasaki S, Johnson R, Jomaa A, Jovanovic M, Jungreis I, Kellis M, Kieft JS, Kochetov AV, Koonin EV, Korostelev AA, Kufel J, Kulakovskiy IV, Kurian L, Lafontaine DLJ, Larsson O, Loughran G, Lukeš J, Mariotti M, Martens-Uzunova ES, Martinez TF, Matsumoto A, McManus J, Medenbach J, Melnikov SV, Menschaert G, Merchante C, Mikl M, Miller WA, Mühlemann O, Namy O, Nedialkova DD, Nosek J, Orchard S, Ozretić P, Pertea M, Pervouchine DD, Romão L, Ron D, Roucou X, Rubtsova MP, Ruiz-Orera J, Saghatelian A, Salzberg SL, Seale LA, Seoighe C, Sergiev PV, Shah P, Shirokikh N, Slavoff SA, Sonenberg N, Stasevich TJ, Szczesny RJ… See abstract for full author list ➔ Świrski MI, et al. Among authors: vizcaino ja. Nat Methods. 2025 Oct;22(10):2002-2006. doi: 10.1038/s41592-025-02810-3. Nat Methods. 2025. PMID: 40890551 Free article. No abstract available.
The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data.
Kopczynski D, Ejsing CS, McDonald JG, Bamba T, Baker ES, Bertrand-Michel J, Brügger B, Coman C, Ellis SR, Garrett TJ, Griffiths WJ, Guan XL, Han X, Höring M, Holčapek M, Hoffmann N, Huynh K, Lehmann R, Jones JW, Kaddurah-Daouk R, Köfeler HC, Meikle PJ, Metz TO, O'Donnell VB, Saigusa D, Schwudke D, Shevchenko A, Torta F, Vizcaíno JA, Welti R, Wenk MR, Wolrab D, Xia Y, Ekroos K, Ahrends R, Liebisch G. Kopczynski D, et al. Among authors: vizcaino ja. J Lipid Res. 2024 Sep;65(9):100621. doi: 10.1016/j.jlr.2024.100621. Epub 2024 Aug 14. J Lipid Res. 2024. PMID: 39151590 Free PMC article.
High-quality peptide evidence for annotating non-canonical open reading frames as human proteins.
Deutsch EW, Kok LW, Mudge JM, Ruiz-Orera J, Fierro-Monti I, Sun Z, Abelin JG, Alba MM, Aspden JL, Bazzini AA, Bruford EA, Brunet MA, Calviello L, Carr SA, Carvunis AR, Chothani S, Clauwaert J, Dean K, Faridi P, Frankish A, Hubner N, Ingolia NT, Magrane M, Martin MJ, Martinez TF, Menschaert G, Ohler U, Orchard S, Rackham O, Roucou X, Slavoff SA, Valen E, Wacholder A, Weissman JS, Wu W, Xie Z, Choudhary J, Bassani-Sternberg M, Vizcaíno JA, Ternette N, Moritz RL, Prensner JR, van Heesch S. Deutsch EW, et al. Among authors: vizcaino ja. bioRxiv [Preprint]. 2025 Jul 24:2024.09.09.612016. doi: 10.1101/2024.09.09.612016. bioRxiv. 2025. Update in: Nature. 2026 Jun;654(8119):813-825. doi: 10.1038/s41586-026-10459-x. PMID: 39314370 Free PMC article. Updated. Preprint.
Community benchmarking and evaluation of human unannotated microprotein detection by mass spectrometry based proteomics.
Wacholder A, Deutsch EW, Kok LW, van Dinter JT, Lee J, Wright JC, Leblanc S, Jayatissa AH, Jiang K, Arefiev I, Cao K, Bourassa F, Trifiro FA, Bassani-Sternberg M, Baranov PV, Bogaert A, Chothani S, Fierro-Monti I, Fijalkowska D, Gevaert K, Hubner N, Mudge JM, Ruiz-Orera J, Schulz J, Vizcaíno JA, Prensner JR, Brunet MA, Martinez TF, Slavoff SA, Roucou X, Choudhary JS, van Heesch S, Moritz RL, Carvunis AR. Wacholder A, et al. Among authors: vizcaino ja. Nat Commun. 2026 Jan 21;17(1):1241. doi: 10.1038/s41467-025-68002-x. Nat Commun. 2026. PMID: 41559053 Free PMC article.
196 results