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GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways.
Dahlquist KD, Salomonis N, Vranizan K, Lawlor SC, Conklin BR. Dahlquist KD, et al. Among authors: vranizan k. Nat Genet. 2002 May;31(1):19-20. doi: 10.1038/ng0502-19. Nat Genet. 2002. PMID: 11984561 No abstract available.
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data.
Doniger SW, Salomonis N, Dahlquist KD, Vranizan K, Lawlor SC, Conklin BR. Doniger SW, et al. Among authors: vranizan k. Genome Biol. 2003;4(1):R7. doi: 10.1186/gb-2003-4-1-r7. Epub 2003 Jan 6. Genome Biol. 2003. PMID: 12540299 Free PMC article.
GenMAPP 2: new features and resources for pathway analysis.
Salomonis N, Hanspers K, Zambon AC, Vranizan K, Lawlor SC, Dahlquist KD, Doniger SW, Stuart J, Conklin BR, Pico AR. Salomonis N, et al. Among authors: vranizan k. BMC Bioinformatics. 2007 Jun 24;8:217. doi: 10.1186/1471-2105-8-217. BMC Bioinformatics. 2007. PMID: 17588266 Free PMC article.
Early anti-oxidative and anti-proliferative curcumin effects on neuroglioma cells suggest therapeutic targets.
Panchal HD, Vranizan K, Lee CY, Ho J, Ngai J, Timiras PS. Panchal HD, et al. Among authors: vranizan k. Neurochem Res. 2008 Sep;33(9):1701-10. doi: 10.1007/s11064-008-9608-x. Epub 2008 Feb 26. Neurochem Res. 2008. PMID: 18299980
GO-Elite: a flexible solution for pathway and ontology over-representation.
Zambon AC, Gaj S, Ho I, Hanspers K, Vranizan K, Evelo CT, Conklin BR, Pico AR, Salomonis N. Zambon AC, et al. Among authors: vranizan k. Bioinformatics. 2012 Aug 15;28(16):2209-10. doi: 10.1093/bioinformatics/bts366. Epub 2012 Jun 27. Bioinformatics. 2012. PMID: 22743224 Free PMC article.
Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation.
Salomonis N, Schlieve CR, Pereira L, Wahlquist C, Colas A, Zambon AC, Vranizan K, Spindler MJ, Pico AR, Cline MS, Clark TA, Williams A, Blume JE, Samal E, Mercola M, Merrill BJ, Conklin BR. Salomonis N, et al. Among authors: vranizan k. Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10514-9. doi: 10.1073/pnas.0912260107. Epub 2010 May 24. Proc Natl Acad Sci U S A. 2010. PMID: 20498046 Free PMC article.
Alternative splicing in the differentiation of human embryonic stem cells into cardiac precursors.
Salomonis N, Nelson B, Vranizan K, Pico AR, Hanspers K, Kuchinsky A, Ta L, Mercola M, Conklin BR. Salomonis N, et al. Among authors: vranizan k. PLoS Comput Biol. 2009 Nov;5(11):e1000553. doi: 10.1371/journal.pcbi.1000553. Epub 2009 Nov 6. PLoS Comput Biol. 2009. PMID: 19893621 Free PMC article.
Analysis of gene expression during neurite outgrowth and regeneration.
Szpara ML, Vranizan K, Tai YC, Goodman CS, Speed TP, Ngai J. Szpara ML, et al. Among authors: vranizan k. BMC Neurosci. 2007 Nov 23;8:100. doi: 10.1186/1471-2202-8-100. BMC Neurosci. 2007. PMID: 18036227 Free PMC article.
Gene-trapped mouse embryonic stem cell-derived cardiac myocytes and human genetics implicate AKAP10 in heart rhythm regulation.
Tingley WG, Pawlikowska L, Zaroff JG, Kim T, Nguyen T, Young SG, Vranizan K, Kwok PY, Whooley MA, Conklin BR. Tingley WG, et al. Among authors: vranizan k. Proc Natl Acad Sci U S A. 2007 May 15;104(20):8461-6. doi: 10.1073/pnas.0610393104. Epub 2007 May 7. Proc Natl Acad Sci U S A. 2007. PMID: 17485678 Free PMC article.
Identifying genetic networks underlying myometrial transition to labor.
Salomonis N, Cotte N, Zambon AC, Pollard KS, Vranizan K, Doniger SW, Dolganov G, Conklin BR. Salomonis N, et al. Among authors: vranizan k. Genome Biol. 2005;6(2):R12. doi: 10.1186/gb-2005-6-2-r12. Epub 2005 Jan 28. Genome Biol. 2005. PMID: 15693941 Free PMC article.
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