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WHAT IF: a molecular modeling and drug design program.
Vriend G. Vriend G. J Mol Graph. 1990 Mar;8(1):52-6, 29. doi: 10.1016/0263-7855(90)80070-v. J Mol Graph. 1990. PMID: 2268628
Conformational changes in the chaperonin GroEL: new insights into the allosteric mechanism.
de Groot BL, Vriend G, Berendsen HJ. de Groot BL, et al. Among authors: vriend g. J Mol Biol. 1999 Mar 5;286(4):1241-9. doi: 10.1006/jmbi.1998.2568. J Mol Biol. 1999. PMID: 10047494
X-ray structure of lipoamide dehydrogenase from Azotobacter vinelandii determined by a combination of molecular and isomorphous replacement techniques.
Schierbeek AJ, Swarte MB, Dijkstra BW, Vriend G, Read RJ, Hol WG, Drenth J, Betzel C. Schierbeek AJ, et al. Among authors: vriend g. J Mol Biol. 1989 Mar 20;206(2):365-79. doi: 10.1016/0022-2836(89)90486-5. J Mol Biol. 1989. PMID: 2716052
Crystal structure of the p-hydroxybenzoate hydroxylase-substrate complex refined at 1.9 A resolution. Analysis of the enzyme-substrate and enzyme-product complexes.
Schreuder HA, Prick PA, Wierenga RK, Vriend G, Wilson KS, Hol WG, Drenth J. Schreuder HA, et al. Among authors: vriend g. J Mol Biol. 1989 Aug 20;208(4):679-96. doi: 10.1016/0022-2836(89)90158-7. J Mol Biol. 1989. PMID: 2553983
A very fast program for visualizing protein surfaces, channels and cavities.
Voorintholt R, Kosters MT, Vegter G, Vriend G, Hol WG. Voorintholt R, et al. Among authors: vriend g. J Mol Graph. 1989 Dec;7(4):243-5. doi: 10.1016/0263-7855(89)80010-4. J Mol Graph. 1989. PMID: 2486827
Rubredoxin reductase of Pseudomonas oleovorans. Structural relationship to other flavoprotein oxidoreductases based on one NAD and two FAD fingerprints.
Eggink G, Engel H, Vriend G, Terpstra P, Witholt B. Eggink G, et al. Among authors: vriend g. J Mol Biol. 1990 Mar 5;212(1):135-42. doi: 10.1016/0022-2836(90)90310-I. J Mol Biol. 1990. PMID: 2319593
3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine.
McGuire R, Verhoeven S, Vass M, Vriend G, de Esch IJ, Lusher SJ, Leurs R, Ridder L, Kooistra AJ, Ritschel T, de Graaf C. McGuire R, et al. Among authors: vriend g. J Chem Inf Model. 2017 Feb 27;57(2):115-121. doi: 10.1021/acs.jcim.6b00686. Epub 2017 Feb 14. J Chem Inf Model. 2017. PMID: 28125221 Free PMC article.
Completion and refinement of 3-D homology models with restricted molecular dynamics: application to targets 47, 58, and 111 in the CASP modeling competition and posterior analysis.
Flohil JA, Vriend G, Berendsen HJ. Flohil JA, et al. Among authors: vriend g. Proteins. 2002 Sep 1;48(4):593-604. doi: 10.1002/prot.10105. Proteins. 2002. PMID: 12211026
The essential dynamics of thermolysin: confirmation of the hinge-bending motion and comparison of simulations in vacuum and water.
van Aalten DM, Amadei A, Linssen AB, Eijsink VG, Vriend G, Berendsen HJ. van Aalten DM, et al. Among authors: vriend g. Proteins. 1995 May;22(1):45-54. doi: 10.1002/prot.340220107. Proteins. 1995. PMID: 7675786
Analysis of structural determinants of the stability of thermolysin-like proteases by molecular modelling and site-directed mutagenesis.
Veltman OR, Vriend G, Middelhoven PJ, van den Burg B, Venema G, Eijsink VG. Veltman OR, et al. Among authors: vriend g. Protein Eng. 1996 Dec;9(12):1181-9. doi: 10.1093/protein/9.12.1181. Protein Eng. 1996. PMID: 9010931
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