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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
J Comput Biol. 2012.
PMID: 22506599
Free PMC article.
QUAST: quality assessment tool for genome assemblies.
Gurevich A, Saveliev V, Vyahhi N, Tesler G.
Gurevich A, et al. Among authors: vyahhi n.
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
Bioinformatics. 2013.
PMID: 23422339
Free PMC article.
Item in Clipboard
Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum.
McLean JS, Lombardo MJ, Badger JH, Edlund A, Novotny M, Yee-Greenbaum J, Vyahhi N, Hall AP, Yang Y, Dupont CL, Ziegler MG, Chitsaz H, Allen AE, Yooseph S, Tesler G, Pevzner PA, Friedman RM, Nealson KH, Venter JC, Lasken RS.
McLean JS, et al. Among authors: vyahhi n.
Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):E2390-9. doi: 10.1073/pnas.1219809110. Epub 2013 Jun 10.
Proc Natl Acad Sci U S A. 2013.
PMID: 23754396
Free PMC article.
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C-Sibelia: an easy-to-use and highly accurate tool for bacterial genome comparison.
Minkin I, Pham H, Starostina E, Vyahhi N, Pham S.
Minkin I, et al. Among authors: vyahhi n.
F1000Res. 2013 Nov 25;2:258. doi: 10.12688/f1000research.2-258.v1. eCollection 2013.
F1000Res. 2013.
PMID: 25110578
Free PMC article.
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The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability.
Li JW, Bolser D, Manske M, Giorgi FM, Vyahhi N, Usadel B, Clavijo BJ, Chan TF, Wong N, Zerbino D, Schneider MV.
Li JW, et al. Among authors: vyahhi n.
Brief Bioinform. 2013 Sep;14(5):548-55. doi: 10.1093/bib/bbt045. Epub 2013 Jun 21.
Brief Bioinform. 2013.
PMID: 23793381
Free PMC article.
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