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Image analysis for automatic segmentation of cytoplasms and classification of Rac1 activation.
Lindblad J, Wählby C, Bengtsson E, Zaltsman A. Lindblad J, et al. Among authors: wahlby c. Cytometry A. 2004 Jan;57(1):22-33. doi: 10.1002/cyto.a.10107. Cytometry A. 2004. PMID: 14699602
Sequential immunofluorescence staining and image analysis for detection of large numbers of antigens in individual cell nuclei.
Wählby C, Erlandsson F, Bengtsson E, Zetterberg A. Wählby C, et al. Cytometry. 2002 Jan 1;47(1):32-41. Cytometry. 2002. PMID: 11774347
Algorithms for cytoplasm segmentation of fluorescence labelled cells.
Wählby C, Lindblad J, Vondrus M, Bengtsson E, Björkesten L. Wählby C, et al. Anal Cell Pathol. 2002;24(2-3):101-11. doi: 10.1155/2002/821782. Anal Cell Pathol. 2002. PMID: 12446959 Free PMC article.
Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections.
Wählby C, Sintorn IM, Erlandsson F, Borgefors G, Bengtsson E. Wählby C, et al. J Microsc. 2004 Jul;215(Pt 1):67-76. doi: 10.1111/j.0022-2720.2004.01338.x. J Microsc. 2004. PMID: 15230877
BlobFinder, a tool for fluorescence microscopy image cytometry.
Allalou A, Wählby C. Allalou A, et al. Among authors: wahlby c. Comput Methods Programs Biomed. 2009 Apr;94(1):58-65. doi: 10.1016/j.cmpb.2008.08.006. Epub 2008 Oct 23. Comput Methods Programs Biomed. 2009. PMID: 18950895
A detailed analysis of 3D subcellular signal localization.
Pinidiyaarachchi A, Zieba A, Allalou A, Pardali K, Wählby C. Pinidiyaarachchi A, et al. Among authors: wahlby c. Cytometry A. 2009 Apr;75(4):319-28. doi: 10.1002/cyto.a.20663. Cytometry A. 2009. PMID: 19006073
Quantification of colocalization and cross-talk based on spectral angles.
Gavrilovic M, Wählby C. Gavrilovic M, et al. Among authors: wahlby c. J Microsc. 2009 Jun;234(3):311-24. doi: 10.1111/j.1365-2818.2009.03170.x. J Microsc. 2009. PMID: 19493110
Robust signal detection in 3D fluorescence microscopy.
Allalou A, Pinidiyaarachchi A, Wählby C. Allalou A, et al. Among authors: wahlby c. Cytometry A. 2010 Jan;77(1):86-96. doi: 10.1002/cyto.a.20795. Cytometry A. 2010. PMID: 19760746
Automated classification of multicolored rolling circle products in dual-channel wide-field fluorescence microscopy.
Gavrilovic M, Weibrecht I, Conze T, Söderberg O, Wählby C. Gavrilovic M, et al. Among authors: wahlby c. Cytometry A. 2011 Jul;79(7):518-27. doi: 10.1002/cyto.a.21087. Epub 2011 Jun 10. Cytometry A. 2011. PMID: 21671402
Global gray-level thresholding based on object size.
Ranefall P, Wählby C. Ranefall P, et al. Among authors: wahlby c. Cytometry A. 2016 Apr;89(4):385-90. doi: 10.1002/cyto.a.22806. Epub 2016 Jan 22. Cytometry A. 2016. PMID: 26800009
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