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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2009 3
2010 3
2011 3
2012 8
2013 10
2014 10
2015 2
2016 1
2020 0
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33 results
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Page 1
2016 update of the PRIDE database and its related tools.
Vizcaíno JA, Csordas A, del-Toro N, Dianes JA, Griss J, Lavidas I, Mayer G, Perez-Riverol Y, Reisinger F, Ternent T, Xu QW, Wang R, Hermjakob H. Vizcaíno JA, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D447-56. doi: 10.1093/nar/gkv1145. Epub 2015 Nov 2. Nucleic Acids Res. 2016. PMID: 26527722 Free PMC article.
A survey of molecular descriptors used in mass spectrometry based proteomics.
Audain E, Sanchez A, Vizcaíno JA, Perez-Riverol Y. Audain E, et al. Curr Top Med Chem. 2014;14(3):388-97. doi: 10.2174/1568026613666131204113537. Curr Top Med Chem. 2014. PMID: 24304317 Review.
Controlled vocabularies and ontologies in proteomics: overview, principles and practice.
Mayer G, Jones AR, Binz PA, Deutsch EW, Orchard S, Montecchi-Palazzi L, Vizcaíno JA, Hermjakob H, Oveillero D, Julian R, Stephan C, Meyer HE, Eisenacher M. Mayer G, et al. Biochim Biophys Acta. 2014 Jan;1844(1 Pt A):98-107. doi: 10.1016/j.bbapap.2013.02.017. Epub 2013 Feb 19. Biochim Biophys Acta. 2014. PMID: 23429179 Free PMC article. Review.
Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective.
Perez-Riverol Y, Wang R, Hermjakob H, Müller M, Vesada V, Vizcaíno JA. Perez-Riverol Y, et al. Biochim Biophys Acta. 2014 Jan;1844(1 Pt A):63-76. doi: 10.1016/j.bbapap.2013.02.032. Epub 2013 Mar 1. Biochim Biophys Acta. 2014. PMID: 23467006 Free PMC article. Review.
Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research.
Vizcaíno JA, Foster JM, Martens L. Vizcaíno JA, et al. J Proteomics. 2010 Oct 10;73(11):2136-46. doi: 10.1016/j.jprot.2010.06.008. Epub 2010 Jul 6. J Proteomics. 2010. PMID: 20615486 Free PMC article. Review.
The Proteomics Identifications database: 2010 update.
Vizcaíno JA, Côté R, Reisinger F, Barsnes H, Foster JM, Rameseder J, Hermjakob H, Martens L. Vizcaíno JA, et al. Nucleic Acids Res. 2010 Jan;38(Database issue):D736-42. doi: 10.1093/nar/gkp964. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906717 Free PMC article.
Improvements in the Protein Identifier Cross-Reference service.
Wein SP, Côté RG, Dumousseau M, Reisinger F, Hermjakob H, Vizcaíno JA. Wein SP, et al. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W276-80. doi: 10.1093/nar/gks338. Epub 2012 Apr 27. Nucleic Acids Res. 2012. PMID: 22544604 Free PMC article.
PRIDE Cluster: building a consensus of proteomics data.
Griss J, Foster JM, Hermjakob H, Vizcaíno JA. Griss J, et al. Nat Methods. 2013 Feb;10(2):95-6. doi: 10.1038/nmeth.2343. Nat Methods. 2013. PMID: 23361086 Free PMC article. No abstract available.
ProteomeXchange provides globally coordinated proteomics data submission and dissemination.
Vizcaíno JA, Deutsch EW, Wang R, Csordas A, Reisinger F, Ríos D, Dianes JA, Sun Z, Farrah T, Bandeira N, Binz PA, Xenarios I, Eisenacher M, Mayer G, Gatto L, Campos A, Chalkley RJ, Kraus HJ, Albar JP, Martinez-Bartolomé S, Apweiler R, Omenn GS, Martens L, Jones AR, Hermjakob H. Vizcaíno JA, et al. Nat Biotechnol. 2014 Mar;32(3):223-6. doi: 10.1038/nbt.2839. Nat Biotechnol. 2014. PMID: 24727771 Free PMC article. No abstract available.
A standardized framing for reporting protein identifications in mzIdentML 1.2.
Seymour SL, Farrah T, Binz PA, Chalkley RJ, Cottrell JS, Searle BC, Tabb DL, Vizcaíno JA, Prieto G, Uszkoreit J, Eisenacher M, Martínez-Bartolomé S, Ghali F, Jones AR. Seymour SL, et al. Proteomics. 2014 Nov;14(21-22):2389-99. doi: 10.1002/pmic.201400080. Epub 2014 Sep 23. Proteomics. 2014. PMID: 25092112 Free PMC article.
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