Waack S - Search Results

1

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources.

Stanke M, Schöffmann O, Morgenstern B, Waack S. Stanke M, et al. Among authors: waack s. BMC Bioinformatics. 2006 Feb 9;7:62. doi: 10.1186/1471-2105-7-62. BMC Bioinformatics. 2006. PMID: 16469098 Free PMC article.

2

Gene prediction with a hidden Markov model and a new intron submodel.

Stanke M, Waack S. Stanke M, et al. Among authors: waack s. Bioinformatics. 2003 Oct;19 Suppl 2:ii215-25. doi: 10.1093/bioinformatics/btg1080. Bioinformatics. 2003. PMID: 14534192

3

AUGUSTUS: a web server for gene finding in eukaryotes.

Stanke M, Steinkamp R, Waack S, Morgenstern B. Stanke M, et al. Among authors: waack s. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W309-12. doi: 10.1093/nar/gkh379. Nucleic Acids Res. 2004. PMID: 15215400 Free PMC article.

4

Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species.

Keller O, Odronitz F, Stanke M, Kollmar M, Waack S. Keller O, et al. Among authors: waack s. BMC Bioinformatics. 2008 Jun 13;9:278. doi: 10.1186/1471-2105-9-278. BMC Bioinformatics. 2008. PMID: 18554390 Free PMC article.

5

AUGUSTUS: ab initio prediction of alternative transcripts.

Stanke M, Keller O, Gunduz I, Hayes A, Waack S, Morgenstern B. Stanke M, et al. Among authors: waack s. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W435-9. doi: 10.1093/nar/gkl200. Nucleic Acids Res. 2006. PMID: 16845043 Free PMC article.

6

A novel hybrid gene prediction method employing protein multiple sequence alignments.

Keller O, Kollmar M, Stanke M, Waack S. Keller O, et al. Among authors: waack s. Bioinformatics. 2011 Mar 15;27(6):757-63. doi: 10.1093/bioinformatics/btr010. Epub 2011 Jan 6. Bioinformatics. 2011. PMID: 21216780

7

CRF-based models of protein surfaces improve protein-protein interaction site predictions.

Dong Z, Wang K, Dang TK, Gültas M, Welter M, Wierschin T, Stanke M, Waack S. Dong Z, et al. Among authors: waack s. BMC Bioinformatics. 2014 Aug 13;15(1):277. doi: 10.1186/1471-2105-15-277. BMC Bioinformatics. 2014. PMID: 25124108 Free PMC article.

8

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models.

Waack S, Keller O, Asper R, Brodag T, Damm C, Fricke WF, Surovcik K, Meinicke P, Merkl R. Waack S, et al. BMC Bioinformatics. 2006 Mar 16;7:142. doi: 10.1186/1471-2105-7-142. BMC Bioinformatics. 2006. PMID: 16542435 Free PMC article.

9

Combining features in a graphical model to predict protein binding sites.

Wierschin T, Wang K, Welter M, Waack S, Stanke M. Wierschin T, et al. Among authors: waack s. Proteins. 2015 May;83(5):844-52. doi: 10.1002/prot.24775. Epub 2015 Mar 14. Proteins. 2015. PMID: 25663045

10

GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures.

Hammesfahr B, Odronitz F, Mühlhausen S, Waack S, Kollmar M. Hammesfahr B, et al. Among authors: waack s. BMC Bioinformatics. 2013 Mar 4;14:77. doi: 10.1186/1471-2105-14-77. BMC Bioinformatics. 2013. PMID: 23496949 Free PMC article.

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