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Alveolate mitochondrial metabolic evolution: dinoflagellates force reassessment of the role of parasitism as a driver of change in apicomplexans.
Danne JC, Gornik SG, Macrae JI, McConville MJ, Waller RF. Danne JC, et al. Among authors: waller rf. Mol Biol Evol. 2013 Jan;30(1):123-39. doi: 10.1093/molbev/mss205. Epub 2012 Aug 25. Mol Biol Evol. 2013. PMID: 22923466
Apicomplexan Energy Metabolism: Carbon Source Promiscuity and the Quiescence Hyperbole.
Jacot D, Waller RF, Soldati-Favre D, MacPherson DA, MacRae JI. Jacot D, et al. Among authors: waller rf. Trends Parasitol. 2016 Jan;32(1):56-70. doi: 10.1016/ Epub 2015 Oct 17. Trends Parasitol. 2016. PMID: 26472327 Review.
Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.
Woo YH, Ansari H, Otto TD, Klinger CM, Kolisko M, Michálek J, Saxena A, Shanmugam D, Tayyrov A, Veluchamy A, Ali S, Bernal A, del Campo J, Cihlář J, Flegontov P, Gornik SG, Hajdušková E, Horák A, Janouškovec J, Katris NJ, Mast FD, Miranda-Saavedra D, Mourier T, Naeem R, Nair M, Panigrahi AK, Rawlings ND, Padron-Regalado E, Ramaprasad A, Samad N, Tomčala A, Wilkes J, Neafsey DE, Doerig C, Bowler C, Keeling PJ, Roos DS, Dacks JB, Templeton TJ, Waller RF, Lukeš J, Oborník M, Pain A. Woo YH, et al. Among authors: waller rf. Elife. 2015 Jul 15;4:e06974. doi: 10.7554/eLife.06974. Elife. 2015. PMID: 26175406 Free PMC article.
New host range for Hematodinium in southern Australia and novel tools for sensitive detection of parasitic dinoflagellates.
Gornik SG, Cranenburgh A, Waller RF. Gornik SG, et al. Among authors: waller rf. PLoS One. 2013 Dec 6;8(12):e82774. doi: 10.1371/journal.pone.0082774. eCollection 2013. PLoS One. 2013. PMID: 24324829 Free PMC article.
Endosymbiosis undone by stepwise elimination of the plastid in a parasitic dinoflagellate.
Gornik SG, Febrimarsa, Cassin AM, MacRae JI, Ramaprasad A, Rchiad Z, McConville MJ, Bacic A, McFadden GI, Pain A, Waller RF. Gornik SG, et al. Among authors: waller rf. Proc Natl Acad Sci U S A. 2015 May 5;112(18):5767-72. doi: 10.1073/pnas.1423400112. Epub 2015 Apr 20. Proc Natl Acad Sci U S A. 2015. PMID: 25902514 Free PMC article.
The single mitochondrial porin of Trypanosoma brucei is the main metabolite transporter in the outer mitochondrial membrane.
Pusnik M, Charrière F, Mäser P, Waller RF, Dagley MJ, Lithgow T, Schneider A. Pusnik M, et al. Among authors: waller rf. Mol Biol Evol. 2009 Mar;26(3):671-80. doi: 10.1093/molbev/msn288. Epub 2008 Dec 17. Mol Biol Evol. 2009. PMID: 19091722
Analysis of dinoflagellate mitochondrial protein sorting signals indicates a highly stable protein targeting system across eukaryotic diversity.
Danne JC, Waller RF. Danne JC, et al. Among authors: waller rf. J Mol Biol. 2011 May 13;408(4):643-53. doi: 10.1016/j.jmb.2011.02.057. Epub 2011 Mar 2. J Mol Biol. 2011. PMID: 21376056
Plastid evolution.
Gould SB, Waller RF, McFadden GI. Gould SB, et al. Among authors: waller rf. Annu Rev Plant Biol. 2008;59:491-517. doi: 10.1146/annurev.arplant.59.032607.092915. Annu Rev Plant Biol. 2008. PMID: 18315522 Review.
Ciliate pellicular proteome identifies novel protein families with characteristic repeat motifs that are common to alveolates.
Gould SB, Kraft LG, van Dooren GG, Goodman CD, Ford KL, Cassin AM, Bacic A, McFadden GI, Waller RF. Gould SB, et al. Among authors: waller rf. Mol Biol Evol. 2011 Mar;28(3):1319-31. doi: 10.1093/molbev/msq321. Epub 2010 Dec 2. Mol Biol Evol. 2011. PMID: 21127172
Dinoflagellate phylogeny revisited: using ribosomal proteins to resolve deep branching dinoflagellate clades.
Bachvaroff TR, Gornik SG, Concepcion GT, Waller RF, Mendez GS, Lippmeier JC, Delwiche CF. Bachvaroff TR, et al. Among authors: waller rf. Mol Phylogenet Evol. 2014 Jan;70:314-22. doi: 10.1016/j.ympev.2013.10.007. Epub 2013 Oct 14. Mol Phylogenet Evol. 2014. PMID: 24135237 Free PMC article.
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