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120 results
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ESpritz: accurate and fast prediction of protein disorder.
Walsh I, Martin AJ, Di Domenico T, Tosatto SC. Walsh I, et al. Bioinformatics. 2012 Feb 15;28(4):503-9. doi: 10.1093/bioinformatics/btr682. Epub 2011 Dec 20. Bioinformatics. 2012. PMID: 22190692
FELLS: fast estimator of latent local structure.
Piovesan D, Walsh I, Minervini G, Tosatto SCE. Piovesan D, et al. Among authors: walsh i. Bioinformatics. 2017 Jun 15;33(12):1889-1891. doi: 10.1093/bioinformatics/btx085. Bioinformatics. 2017. PMID: 28186245
RUBI: rapid proteomic-scale prediction of lysine ubiquitination and factors influencing predictor performance.
Walsh I, Di Domenico T, Tosatto SC. Walsh I, et al. Amino Acids. 2014 Apr;46(4):853-62. doi: 10.1007/s00726-013-1645-3. Epub 2013 Dec 23. Amino Acids. 2014. PMID: 24363213
PASTA 2.0: an improved server for protein aggregation prediction.
Walsh I, Seno F, Tosatto SC, Trovato A. Walsh I, et al. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W301-7. doi: 10.1093/nar/gku399. Epub 2014 May 21. Nucleic Acids Res. 2014. PMID: 24848016 Free PMC article.
MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins.
Potenza E, Di Domenico T, Walsh I, Tosatto SC. Potenza E, et al. Among authors: walsh i. Nucleic Acids Res. 2015 Jan;43(Database issue):D315-20. doi: 10.1093/nar/gku982. Epub 2014 Oct 31. Nucleic Acids Res. 2015. PMID: 25361972 Free PMC article.
Comprehensive large-scale assessment of intrinsic protein disorder.
Walsh I, Giollo M, Di Domenico T, Ferrari C, Zimmermann O, Tosatto SC. Walsh I, et al. Bioinformatics. 2015 Jan 15;31(2):201-8. doi: 10.1093/bioinformatics/btu625. Epub 2014 Sep 21. Bioinformatics. 2015. PMID: 25246432
RepeatsDB: a database of tandem repeat protein structures.
Di Domenico T, Potenza E, Walsh I, Parra RG, Giollo M, Minervini G, Piovesan D, Ihsan A, Ferrari C, Kajava AV, Tosatto SC. Di Domenico T, et al. Among authors: walsh i. Nucleic Acids Res. 2014 Jan;42(Database issue):D352-7. doi: 10.1093/nar/gkt1175. Epub 2013 Dec 5. Nucleic Acids Res. 2014. PMID: 24311564 Free PMC article.
PANADA: protein association network annotation, determination and analysis.
Martin AJ, Walsh I, Domenico TD, Mičetić I, Tosatto SC. Martin AJ, et al. Among authors: walsh i. PLoS One. 2013 Nov 12;8(11):e78383. doi: 10.1371/journal.pone.0078383. eCollection 2013. PLoS One. 2013. PMID: 24265686 Free PMC article.
Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database.
Di Domenico T, Walsh I, Tosatto SC. Di Domenico T, et al. Among authors: walsh i. BMC Bioinformatics. 2013;14 Suppl 7(Suppl 7):S3. doi: 10.1186/1471-2105-14-S7-S3. Epub 2013 Apr 22. BMC Bioinformatics. 2013. PMID: 23815411 Free PMC article.
RAPHAEL: recognition, periodicity and insertion assignment of solenoid protein structures.
Walsh I, Sirocco FG, Minervini G, Di Domenico T, Ferrari C, Tosatto SC. Walsh I, et al. Bioinformatics. 2012 Dec 15;28(24):3257-64. doi: 10.1093/bioinformatics/bts550. Epub 2012 Sep 8. Bioinformatics. 2012. PMID: 22962341
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