Wang LS - Search Results

1

High-throughput identification of long-range regulatory elements and their target promoters in the human genome.

Hwang YC, Zheng Q, Gregory BD, Wang LS. Hwang YC, et al. Among authors: wang ls. Nucleic Acids Res. 2013 May;41(9):4835-46. doi: 10.1093/nar/gkt188. Epub 2013 Mar 21. Nucleic Acids Res. 2013. PMID: 23525463 Free PMC article.

2

TREMOR--a tool for retrieving transcriptional modules by incorporating motif covariance.

Singh LN, Wang LS, Hannenhalli S. Singh LN, et al. Among authors: wang ls. Nucleic Acids Res. 2007;35(21):7360-71. doi: 10.1093/nar/gkm885. Epub 2007 Oct 25. Nucleic Acids Res. 2007. PMID: 17962303 Free PMC article.

3

Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae.

Hershman SG, Chen Q, Lee JY, Kozak ML, Yue P, Wang LS, Johnson FB. Hershman SG, et al. Among authors: wang ls. Nucleic Acids Res. 2008 Jan;36(1):144-56. doi: 10.1093/nar/gkm986. Epub 2007 Nov 13. Nucleic Acids Res. 2008. PMID: 17999996 Free PMC article.

4

Altered gene expression in the Werner and Bloom syndromes is associated with sequences having G-quadruplex forming potential.

Johnson JE, Cao K, Ryvkin P, Wang LS, Johnson FB. Johnson JE, et al. Among authors: wang ls. Nucleic Acids Res. 2010 Mar;38(4):1114-22. doi: 10.1093/nar/gkp1103. Epub 2009 Dec 4. Nucleic Acids Res. 2010. PMID: 19966276 Free PMC article.

5

Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis.

Zheng Q, Ryvkin P, Li F, Dragomir I, Valladares O, Yang J, Cao K, Wang LS, Gregory BD. Zheng Q, et al. Among authors: wang ls. PLoS Genet. 2010 Sep 30;6(9):e1001141. doi: 10.1371/journal.pgen.1001141. PLoS Genet. 2010. PMID: 20941385 Free PMC article.

6

SAVoR: a server for sequencing annotation and visualization of RNA structures.

Li F, Ryvkin P, Childress DM, Valladares O, Gregory BD, Wang LS. Li F, et al. Among authors: wang ls. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W59-64. doi: 10.1093/nar/gks310. Epub 2012 Apr 6. Nucleic Acids Res. 2012. PMID: 22492627 Free PMC article.

7

Global analysis of RNA secondary structure in two metazoans.

Li F, Zheng Q, Ryvkin P, Dragomir I, Desai Y, Aiyer S, Valladares O, Yang J, Bambina S, Sabin LR, Murray JI, Lamitina T, Raj A, Cherry S, Wang LS, Gregory BD. Li F, et al. Among authors: wang ls. Cell Rep. 2012 Jan 26;1(1):69-82. doi: 10.1016/j.celrep.2011.10.002. Epub 2012 Jan 26. Cell Rep. 2012. PMID: 22832108 Free article.

8

CoRAL: predicting non-coding RNAs from small RNA-sequencing data.

Leung YY, Ryvkin P, Ungar LH, Gregory BD, Wang LS. Leung YY, et al. Among authors: wang ls. Nucleic Acids Res. 2013 Aug;41(14):e137. doi: 10.1093/nar/gkt426. Epub 2013 May 21. Nucleic Acids Res. 2013. PMID: 23700308 Free PMC article.

9

DRAW+SneakPeek: analysis workflow and quality metric management for DNA-seq experiments.

Lin CF, Valladares O, Childress DM, Klevak E, Geller ET, Hwang YC, Tsai EA, Schellenberg GD, Wang LS. Lin CF, et al. Among authors: wang ls. Bioinformatics. 2013 Oct 1;29(19):2498-500. doi: 10.1093/bioinformatics/btt422. Epub 2013 Aug 13. Bioinformatics. 2013. PMID: 23943636 Free PMC article.

10

Analysis of nonlinear gene expression progression reveals extensive pathway and age-specific transitions in aging human brains.

Cao K, Ryvkin P, Hwang YC, Johnson FB, Wang LS. Cao K, et al. Among authors: wang ls. PLoS One. 2013 Oct 3;8(10):e74578. doi: 10.1371/journal.pone.0074578. eCollection 2013. PLoS One. 2013. PMID: 24098339 Free PMC article.

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