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116,989 results
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PepQuery enables fast, accurate, and convenient proteomic validation of novel genomic alterations.
Wen B, Wang X, Zhang B. Wen B, et al. Among authors: wang x. Genome Res. 2019 Mar;29(3):485-493. doi: 10.1101/gr.235028.118. Epub 2019 Jan 4. Genome Res. 2019. PMID: 30610011 Free PMC article.
Detection of Proteome Diversity Resulted from Alternative Splicing is Limited by Trypsin Cleavage Specificity.
Wang X, Codreanu SG, Wen B, Li K, Chambers MC, Liebler DC, Zhang B. Wang X, et al. Mol Cell Proteomics. 2018 Mar;17(3):422-430. doi: 10.1074/mcp.RA117.000155. Epub 2017 Dec 8. Mol Cell Proteomics. 2018. PMID: 29222161 Free PMC article.
Methods, Tools and Current Perspectives in Proteogenomics.
Ruggles KV, Krug K, Wang X, Clauser KR, Wang J, Payne SH, Fenyö D, Zhang B, Mani DR. Ruggles KV, et al. Among authors: wang x, wang j. Mol Cell Proteomics. 2017 Jun;16(6):959-981. doi: 10.1074/mcp.MR117.000024. Epub 2017 Apr 29. Mol Cell Proteomics. 2017. PMID: 28456751 Free PMC article. Review.
Colorectal Cancer Cell Line Proteomes Are Representative of Primary Tumors and Predict Drug Sensitivity.
Wang J, Mouradov D, Wang X, Jorissen RN, Chambers MC, Zimmerman LJ, Vasaikar S, Love CG, Li S, Lowes K, Leuchowius KJ, Jousset H, Weinstock J, Yau C, Mariadason J, Shi Z, Ban Y, Chen X, Coffey RJC, Slebos RJC, Burgess AW, Liebler DC, Zhang B, Sieber OM. Wang J, et al. Among authors: wang x. Gastroenterology. 2017 Oct;153(4):1082-1095. doi: 10.1053/j.gastro.2017.06.008. Epub 2017 Jun 16. Gastroenterology. 2017. PMID: 28625833 Free PMC article.
The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data.
Menschaert G, Wang X, Jones AR, Ghali F, Fenyö D, Olexiouk V, Zhang B, Deutsch EW, Ternent T, Vizcaíno JA. Menschaert G, et al. Among authors: wang x. Genome Biol. 2018 Jan 31;19(1):12. doi: 10.1186/s13059-017-1377-x. Genome Biol. 2018. PMID: 29386051 Free PMC article.
Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics.
Wang X, Zhang B. Wang X, et al. J Proteome Res. 2014 Jun 6;13(6):2715-23. doi: 10.1021/pr500194t. Epub 2014 May 12. J Proteome Res. 2014. PMID: 24792918 Free PMC article. Review.
Proteogenomic analysis reveals unanticipated adaptations of colorectal tumor cells to deficiencies in DNA mismatch repair.
Halvey PJ, Wang X, Wang J, Bhat AA, Dhawan P, Li M, Zhang B, Liebler DC, Slebos RJ. Halvey PJ, et al. Among authors: wang x, wang j. Cancer Res. 2014 Jan 1;74(1):387-97. doi: 10.1158/0008-5472.CAN-13-2488. Epub 2013 Nov 18. Cancer Res. 2014. PMID: 24247723 Free PMC article.
Integrating mRNA and Protein Sequencing Enables the Detection and Quantitative Profiling of Natural Protein Sequence Variants of Populus trichocarpa.
Abraham PE, Wang X, Ranjan P, Nookaew I, Zhang B, Tuskan GA, Hettich RL. Abraham PE, et al. Among authors: wang x. J Proteome Res. 2015 Dec 4;14(12):5318-26. doi: 10.1021/acs.jproteome.5b00823. Epub 2015 Oct 30. J Proteome Res. 2015. PMID: 26483142
Protein identification using customized protein sequence databases derived from RNA-Seq data.
Wang X, Slebos RJ, Wang D, Halvey PJ, Tabb DL, Liebler DC, Zhang B. Wang X, et al. Among authors: wang d. J Proteome Res. 2012 Feb 3;11(2):1009-17. doi: 10.1021/pr200766z. Epub 2011 Dec 14. J Proteome Res. 2012. PMID: 22103967 Free PMC article.
customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search.
Wang X, Zhang B. Wang X, et al. Bioinformatics. 2013 Dec 15;29(24):3235-7. doi: 10.1093/bioinformatics/btt543. Epub 2013 Sep 20. Bioinformatics. 2013. PMID: 24058055 Free PMC article.
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