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Applied bioinformatics for the identification of regulatory elements.
Wasserman WW, Sandelin A. Wasserman WW, et al. Nat Rev Genet. 2004 Apr;5(4):276-87. doi: 10.1038/nrg1315. Nat Rev Genet. 2004. PMID: 15131651 Review. No abstract available.
Human-mouse genome comparisons to locate regulatory sites.
Wasserman WW, Palumbo M, Thompson W, Fickett JW, Lawrence CE. Wasserman WW, et al. Nat Genet. 2000 Oct;26(2):225-8. doi: 10.1038/79965. Nat Genet. 2000. PMID: 11017083
In silico identification of metazoan transcriptional regulatory regions.
Wasserman WW, Krivan W. Wasserman WW, et al. Naturwissenschaften. 2003 Apr;90(4):156-66. doi: 10.1007/s00114-003-0409-4. Epub 2003 Mar 27. Naturwissenschaften. 2003. PMID: 12712249 Review.
Identification of conserved regulatory elements by comparative genome analysis.
Lenhard B, Sandelin A, Mendoza L, Engström P, Jareborg N, Wasserman WW. Lenhard B, et al. Among authors: wasserman ww. J Biol. 2003;2(2):13. doi: 10.1186/1475-4924-2-13. Epub 2003 May 22. J Biol. 2003. PMID: 12760745 Free PMC article.
Complete functional rescue of the ABCA1-/- mouse by human BAC transgenesis.
Coutinho JM, Singaraja RR, Kang M, Arenillas DJ, Bertram LN, Bissada N, Staels B, Fruchart JC, Fievet C, Joseph-George AM, Wasserman WW, Hayden MR. Coutinho JM, et al. Among authors: wasserman ww. J Lipid Res. 2005 Jun;46(6):1113-23. doi: 10.1194/jlr.M400506-JLR200. Epub 2005 Mar 16. J Lipid Res. 2005. PMID: 15772424
oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes.
Ho Sui SJ, Mortimer JR, Arenillas DJ, Brumm J, Walsh CJ, Kennedy BP, Wasserman WW. Ho Sui SJ, et al. Among authors: wasserman ww. Nucleic Acids Res. 2005 Jun 2;33(10):3154-64. doi: 10.1093/nar/gki624. Print 2005. Nucleic Acids Res. 2005. PMID: 15933209 Free PMC article.
The Gene Set Builder: collation, curation, and distribution of sets of genes.
Yusuf D, Lim JS, Wasserman WW. Yusuf D, et al. Among authors: wasserman ww. BMC Bioinformatics. 2005 Dec 21;6:305. doi: 10.1186/1471-2105-6-305. BMC Bioinformatics. 2005. PMID: 16371163 Free PMC article.
SAGE2Splice: unmapped SAGE tags reveal novel splice junctions.
Kuo BY, Chen Y, Bohacec S, Johansson O, Wasserman WW, Simpson EM. Kuo BY, et al. Among authors: wasserman ww. PLoS Comput Biol. 2006 Apr;2(4):e34. doi: 10.1371/journal.pcbi.0020034. Epub 2006 Apr 28. PLoS Comput Biol. 2006. PMID: 16683015 Free PMC article.
oPOSSUM: integrated tools for analysis of regulatory motif over-representation.
Ho Sui SJ, Fulton DL, Arenillas DJ, Kwon AT, Wasserman WW. Ho Sui SJ, et al. Among authors: wasserman ww. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W245-52. doi: 10.1093/nar/gkm427. Epub 2007 Jun 18. Nucleic Acids Res. 2007. PMID: 17576675 Free PMC article.
PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation.
Portales-Casamar E, Kirov S, Lim J, Lithwick S, Swanson MI, Ticoll A, Snoddy J, Wasserman WW. Portales-Casamar E, et al. Among authors: wasserman ww. Genome Biol. 2007;8(10):R207. doi: 10.1186/gb-2007-8-10-r207. Genome Biol. 2007. PMID: 17916232 Free PMC article.
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