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Curation and bioinformatic analysis of strabismus genes supports functional heterogeneity and proposes candidate genes with connections to RASopathies.
Ye XC, van der Lee R, Wasserman WW. Ye XC, et al. Among authors: wasserman ww. Gene. 2019 May 20;697:213-226. doi: 10.1016/j.gene.2019.02.020. Epub 2019 Feb 15. Gene. 2019. PMID: 30772522
In silico identification of metazoan transcriptional regulatory regions.
Wasserman WW, Krivan W. Wasserman WW, et al. Naturwissenschaften. 2003 Apr;90(4):156-66. doi: 10.1007/s00114-003-0409-4. Epub 2003 Mar 27. Naturwissenschaften. 2003. PMID: 12712249 Review.
Identification of conserved regulatory elements by comparative genome analysis.
Lenhard B, Sandelin A, Mendoza L, Engström P, Jareborg N, Wasserman WW. Lenhard B, et al. Among authors: wasserman ww. J Biol. 2003;2(2):13. doi: 10.1186/1475-4924-2-13. Epub 2003 May 22. J Biol. 2003. PMID: 12760745 Free PMC article.
Applied bioinformatics for the identification of regulatory elements.
Wasserman WW, Sandelin A. Wasserman WW, et al. Nat Rev Genet. 2004 Apr;5(4):276-87. doi: 10.1038/nrg1315. Nat Rev Genet. 2004. PMID: 15131651 Review. No abstract available.
The Gene Set Builder: collation, curation, and distribution of sets of genes.
Yusuf D, Lim JS, Wasserman WW. Yusuf D, et al. Among authors: wasserman ww. BMC Bioinformatics. 2005 Dec 21;6:305. doi: 10.1186/1471-2105-6-305. BMC Bioinformatics. 2005. PMID: 16371163 Free PMC article.
oPOSSUM: integrated tools for analysis of regulatory motif over-representation.
Ho Sui SJ, Fulton DL, Arenillas DJ, Kwon AT, Wasserman WW. Ho Sui SJ, et al. Among authors: wasserman ww. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W245-52. doi: 10.1093/nar/gkm427. Epub 2007 Jun 18. Nucleic Acids Res. 2007. PMID: 17576675 Free PMC article.
Identification of a set of genes showing regionally enriched expression in the mouse brain.
D'Souza CA, Chopra V, Varhol R, Xie YY, Bohacec S, Zhao Y, Lee LL, Bilenky M, Portales-Casamar E, He A, Wasserman WW, Goldowitz D, Marra MA, Holt RA, Simpson EM, Jones SJ. D'Souza CA, et al. Among authors: wasserman ww. BMC Neurosci. 2008 Jul 14;9:66. doi: 10.1186/1471-2202-9-66. BMC Neurosci. 2008. PMID: 18625066 Free PMC article.
Discovery and expansion of gene modules by seeking isolated groups in a random graph process.
Brumm J, Conibear E, Wasserman WW, Bryan J. Brumm J, et al. Among authors: wasserman ww. PLoS One. 2008;3(10):e3358. doi: 10.1371/journal.pone.0003358. Epub 2008 Oct 9. PLoS One. 2008. PMID: 18843375 Free PMC article.
TFCat: the curated catalog of mouse and human transcription factors.
Fulton DL, Sundararajan S, Badis G, Hughes TR, Wasserman WW, Roach JC, Sladek R. Fulton DL, et al. Among authors: wasserman ww. Genome Biol. 2009;10(3):R29. doi: 10.1186/gb-2009-10-3-r29. Epub 2009 Mar 12. Genome Biol. 2009. PMID: 19284633 Free PMC article.
A regulatory toolbox of MiniPromoters to drive selective expression in the brain.
Portales-Casamar E, Swanson DJ, Liu L, de Leeuw CN, Banks KG, Ho Sui SJ, Fulton DL, Ali J, Amirabbasi M, Arenillas DJ, Babyak N, Black SF, Bonaguro RJ, Brauer E, Candido TR, Castellarin M, Chen J, Chen Y, Cheng JC, Chopra V, Docking TR, Dreolini L, D'Souza CA, Flynn EK, Glenn R, Hatakka K, Hearty TG, Imanian B, Jiang S, Khorasan-zadeh S, Komljenovic I, Laprise S, Liao NY, Lim JS, Lithwick S, Liu F, Liu J, Lu M, McConechy M, McLeod AJ, Milisavljevic M, Mis J, O'Connor K, Palma B, Palmquist DL, Schmouth JF, Swanson MI, Tam B, Ticoll A, Turner JL, Varhol R, Vermeulen J, Watkins RF, Wilson G, Wong BK, Wong SH, Wong TY, Yang GS, Ypsilanti AR, Jones SJ, Holt RA, Goldowitz D, Wasserman WW, Simpson EM. Portales-Casamar E, et al. Among authors: wasserman ww. Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16589-94. doi: 10.1073/pnas.1009158107. Epub 2010 Aug 31. Proc Natl Acad Sci U S A. 2010. PMID: 20807748 Free PMC article.
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