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3,812 results
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Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.
Kaneko T, Sato S, Kotani H, Tanaka A, Asamizu E, Nakamura Y, Miyajima N, Hirosawa M, Sugiura M, Sasamoto S, Kimura T, Hosouchi T, Matsuno A, Muraki A, Nakazaki N, Naruo K, Okumura S, Shimpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S. Kaneko T, et al. Among authors: watanabe a. DNA Res. 1996 Jun 30;3(3):109-36. doi: 10.1093/dnares/3.3.109. DNA Res. 1996. PMID: 8905231
As a result, a total of 3,168 potential protein genes were assigned on the genome, in which 145 (4.6%) were identical to reported genes and 1,257 (39.6%) and 340 (10.8%) showed similarity to reported and hypothetical genes, respectively. ...By adding rRNA and tRNA g …
As a result, a total of 3,168 potential protein genes were assigned on the genome, in which 145 (4.6%) were identical to repor …
Dissection of the octoploid strawberry genome by deep sequencing of the genomes of Fragaria species.
Hirakawa H, Shirasawa K, Kosugi S, Tashiro K, Nakayama S, Yamada M, Kohara M, Watanabe A, Kishida Y, Fujishiro T, Tsuruoka H, Minami C, Sasamoto S, Kato M, Nanri K, Komaki A, Yanagi T, Guoxin Q, Maeda F, Ishikawa M, Kuhara S, Sato S, Tabata S, Isobe SN. Hirakawa H, et al. Among authors: watanabe a. DNA Res. 2014;21(2):169-81. doi: 10.1093/dnares/dst049. Epub 2013 Nov 26. DNA Res. 2014. PMID: 24282021 Free PMC article.
Subsequently, a virtual reference genome termed FANhybrid_r1.2 was constructed by integrating the sequences of the four homoeologous subgenomes of F. x ananassa, from which heterozygous regions in the Roche 454 and Illumina genome sequences were eliminated. ...
Subsequently, a virtual reference genome termed FANhybrid_r1.2 was constructed by integrating the sequences of the four homoeologous …
Sequencing and comparative analyses of the genomes of zoysiagrasses.
Tanaka H, Hirakawa H, Kosugi S, Nakayama S, Ono A, Watanabe A, Hashiguchi M, Gondo T, Ishigaki G, Muguerza M, Shimizu K, Sawamura N, Inoue T, Shigeki Y, Ohno N, Tabata S, Akashi R, Sato S. Tanaka H, et al. Among authors: watanabe a. DNA Res. 2016 Apr;23(2):171-80. doi: 10.1093/dnares/dsw006. Epub 2016 Mar 14. DNA Res. 2016. PMID: 26975196 Free PMC article.
Zoysiais a warm-season turfgrass, which comprises 11 allotetraploid species (2n= 4x= 40), each possessing different morphological and physiological traits. ...As a reference sequence of Zoysia species, we generated a high-quality draft sequence of the genome …
Zoysiais a warm-season turfgrass, which comprises 11 allotetraploid species (2n= 4x= 40), each possessing different morphological and …
Survey of genome sequences in a wild sweet potato, Ipomoea trifida (H. B. K.) G. Don.
Hirakawa H, Okada Y, Tabuchi H, Shirasawa K, Watanabe A, Tsuruoka H, Minami C, Nakayama S, Sasamoto S, Kohara M, Kishida Y, Fujishiro T, Kato M, Nanri K, Komaki A, Yoshinaga M, Takahata Y, Tanaka M, Tabata S, Isobe SN. Hirakawa H, et al. Among authors: watanabe a. DNA Res. 2015 Apr;22(2):171-9. doi: 10.1093/dnares/dsv002. Epub 2015 Mar 24. DNA Res. 2015. PMID: 25805887 Free PMC article.
A total of 62,407 (62.4 Mb) and 109,449 (87.2 Mb) putative genes were identified, respectively, in the genomes of Mx23Hm and 0431-1, of which 11,823 were derived from core sequences of Mx23Hm, while 28,831 were from the core candidate sequence of 0431-1. There were a
A total of 62,407 (62.4 Mb) and 109,449 (87.2 Mb) putative genes were identified, respectively, in the genomes of Mx23Hm and 0431-1,
Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6T.
Kaneko T, Maita H, Hirakawa H, Uchiike N, Minamisawa K, Watanabe A, Sato S. Kaneko T, et al. Among authors: watanabe a. Genes (Basel). 2011 Oct 28;2(4):763-87. doi: 10.3390/genes2040763. Genes (Basel). 2011. PMID: 24710291 Free PMC article.
Comparison of the whole-genome sequences of USDA6T and USDA110 showed colinearity of major regions in the two genomes, although a large inversion exists between them. A significantly high level of sequence conservation was detected in three regions on each genome. T …
Comparison of the whole-genome sequences of USDA6T and USDA110 showed colinearity of major regions in the two genomes, although a lar …
Sequence analysis of the genome of carnation (Dianthus caryophyllus L.).
Yagi M, Kosugi S, Hirakawa H, Ohmiya A, Tanase K, Harada T, Kishimoto K, Nakayama M, Ichimura K, Onozaki T, Yamaguchi H, Sasaki N, Miyahara T, Nishizaki Y, Ozeki Y, Nakamura N, Suzuki T, Tanaka Y, Sato S, Shirasawa K, Isobe S, Miyamura Y, Watanabe A, Nakayama S, Kishida Y, Kohara M, Tabata S. Yagi M, et al. Among authors: watanabe a. DNA Res. 2014 Jun;21(3):231-41. doi: 10.1093/dnares/dst053. Epub 2013 Dec 17. DNA Res. 2014. PMID: 24344172 Free PMC article.
A total of 1050, 13, 92 and 143 genes for tRNAs, rRNAs, snoRNA and miRNA, respectively, were identified in the assembled genomic sequences. ...The results of this study will serve as a valuable resource for fundamental and applied research of carnation, especially f
A total of 1050, 13, 92 and 143 genes for tRNAs, rRNAs, snoRNA and miRNA, respectively, were identified in the assembled genomic sequ
Construction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria × ananassa) and its applicability.
Isobe SN, Hirakawa H, Sato S, Maeda F, Ishikawa M, Mori T, Yamamoto Y, Shirasawa K, Kimura M, Fukami M, Hashizume F, Tsuji T, Sasamoto S, Kato M, Nanri K, Tsuruoka H, Minami C, Takahashi C, Wada T, Ono A, Kawashima K, Nakazaki N, Kishida Y, Kohara M, Nakayama S, Yamada M, Fujishiro T, Watanabe A, Tabata S. Isobe SN, et al. Among authors: watanabe a. DNA Res. 2013 Feb;20(1):79-92. doi: 10.1093/dnares/dss035. Epub 2012 Dec 17. DNA Res. 2013. PMID: 23248204 Free PMC article.
Several recent studies support the AAA'A'BBB'B' model, but its complexity has hindered genetic and genomic analysis of this important crop. To overcome this difficulty and to assist genome-wide analysis of F. × ananassa, we constructed an integrated linkage map by organizi …
Several recent studies support the AAA'A'BBB'B' model, but its complexity has hindered genetic and genomic analysis of this important …
An EST-SSR linkage map of Raphanus sativus and comparative genomics of the Brassicaceae.
Shirasawa K, Oyama M, Hirakawa H, Sato S, Tabata S, Fujioka T, Kimizuka-Takagi C, Sasamoto S, Watanabe A, Kato M, Kishida Y, Kohara M, Takahashi C, Tsuruoka H, Wada T, Sakai T, Isobe S. Shirasawa K, et al. Among authors: watanabe a. DNA Res. 2011 Aug;18(4):221-32. doi: 10.1093/dnares/dsr013. Epub 2011 Jun 13. DNA Res. 2011. PMID: 21669962 Free PMC article.
Raphanus sativus (2n = 2x = 18) is a widely cultivated member of the family Brassicaceae, for which genomic resources are available only to a limited extent in comparison to many other members of the family. ...Comparison of the mapped EST-SSR marker positions in R. …
Raphanus sativus (2n = 2x = 18) is a widely cultivated member of the family Brassicaceae, for which genomic resources are available o …
Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L.
Sato S, Hirakawa H, Isobe S, Fukai E, Watanabe A, Kato M, Kawashima K, Minami C, Muraki A, Nakazaki N, Takahashi C, Nakayama S, Kishida Y, Kohara M, Yamada M, Tsuruoka H, Sasamoto S, Tabata S, Aizu T, Toyoda A, Shin-i T, Minakuchi Y, Kohara Y, Fujiyama A, Tsuchimoto S, Kajiyama S, Makigano E, Ohmido N, Shibagaki N, Cartagena JA, Wada N, Kohinata T, Atefeh A, Yuasa S, Matsunaga S, Fukui K. Sato S, et al. Among authors: watanabe a. DNA Res. 2011 Feb;18(1):65-76. doi: 10.1093/dnares/dsq030. Epub 2010 Dec 13. DNA Res. 2011. PMID: 21149391 Free PMC article.
The whole genome of Jatropha curcas was sequenced, using a combination of the conventional Sanger method and new-generation multiplex sequencing methods. ...A high degree of microsynteny was observed with the genome of castor bean and, to a lesser extent, wit …
The whole genome of Jatropha curcas was sequenced, using a combination of the conventional Sanger method and new-generation multiplex …
Complete genomic structure of the cultivated rice endophyte Azospirillum sp. B510.
Kaneko T, Minamisawa K, Isawa T, Nakatsukasa H, Mitsui H, Kawaharada Y, Nakamura Y, Watanabe A, Kawashima K, Ono A, Shimizu Y, Takahashi C, Minami C, Fujishiro T, Kohara M, Katoh M, Nakazaki N, Nakayama S, Yamada M, Tabata S, Sato S. Kaneko T, et al. Among authors: watanabe a. DNA Res. 2010 Feb;17(1):37-50. doi: 10.1093/dnares/dsp026. Epub 2010 Jan 4. DNA Res. 2010. PMID: 20047946 Free PMC article.
We determined the nucleotide sequence of the entire genome of a diazotrophic endophyte, Azospirillum sp. B510. Strain B510 is an endophytic bacterium isolated from stems of rice plants (Oryza sativa cv. ...The genomes of the six plasmids contained a total of 3416 pr …
We determined the nucleotide sequence of the entire genome of a diazotrophic endophyte, Azospirillum sp. B510. Strain B510 is an endo …
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