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Balinese Y-chromosome perspective on the peopling of Indonesia: genetic contributions from pre-neolithic hunter-gatherers, Austronesian farmers, and Indian traders.
Karafet TM, Lansing JS, Redd AJ, Reznikova S, Watkins JC, Surata SP, Arthawiguna WA, Mayer L, Bamshad M, Jorde LB, Hammer MF. Karafet TM, et al. Hum Biol. 2005 Feb;77(1):93-114. doi: 10.1353/hub.2005.0030. Hum Biol. 2005. PMID: 16114819
Microsatellite evolution: Markov transition functions for a suite of models.
Watkins JC. Watkins JC. Theor Popul Biol. 2007 Mar;71(2):147-59. doi: 10.1016/j.tpb.2006.10.001. Epub 2006 Oct 11. Theor Popul Biol. 2007. PMID: 17123560
Coevolution of languages and genes on the island of Sumba, eastern Indonesia.
Lansing JS, Cox MP, Downey SS, Gabler BM, Hallmark B, Karafet TM, Norquest P, Schoenfelder JW, Sudoyo H, Watkins JC, Hammer MF. Lansing JS, et al. Proc Natl Acad Sci U S A. 2007 Oct 9;104(41):16022-6. doi: 10.1073/pnas.0704451104. Epub 2007 Oct 3. Proc Natl Acad Sci U S A. 2007. PMID: 17913885 Free PMC article.
Male dominance rarely skews the frequency distribution of Y chromosome haplotypes in human populations.
Lansing JS, Watkins JC, Hallmark B, Cox MP, Karafet TM, Sudoyo H, Hammer MF. Lansing JS, et al. Proc Natl Acad Sci U S A. 2008 Aug 19;105(33):11645-50. doi: 10.1073/pnas.0710158105. Epub 2008 Aug 14. Proc Natl Acad Sci U S A. 2008. PMID: 18703660 Free PMC article.
An early divergence of KhoeSan ancestors from those of other modern humans is supported by an ABC-based analysis of autosomal resequencing data.
Veeramah KR, Wegmann D, Woerner A, Mendez FL, Watkins JC, Destro-Bisol G, Soodyall H, Louie L, Hammer MF. Veeramah KR, et al. Mol Biol Evol. 2012 Feb;29(2):617-30. doi: 10.1093/molbev/msr212. Epub 2011 Sep 1. Mol Biol Evol. 2012. PMID: 21890477 Free PMC article.
Genetic evidence for archaic admixture in Africa.
Hammer MF, Woerner AE, Mendez FL, Watkins JC, Wall JD. Hammer MF, et al. Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15123-8. doi: 10.1073/pnas.1109300108. Epub 2011 Sep 6. Proc Natl Acad Sci U S A. 2011. PMID: 21896735 Free PMC article.
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