Webb-Robertson BJ - Search Results

1

A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.

Matzke MM, Brown JN, Gritsenko MA, Metz TO, Pounds JG, Rodland KD, Shukla AK, Smith RD, Waters KM, McDermott JE, Webb-Robertson BJ. Matzke MM, et al. Proteomics. 2013 Feb;13(3-4):493-503. doi: 10.1002/pmic.201200269. Epub 2012 Nov 8. Proteomics. 2013. PMID: 23019139 Free PMC article. Review.

2

SVM-BALSA: remote homology detection based on Bayesian sequence alignment.

Webb-Robertson BJ, Oehmen C, Matzke M. Webb-Robertson BJ, et al. Comput Biol Chem. 2005 Dec;29(6):440-3. doi: 10.1016/j.compbiolchem.2005.09.006. Epub 2005 Nov 10. Comput Biol Chem. 2005. PMID: 16290168

3

Comparative proteomics and pulmonary toxicity of instilled single-walled carbon nanotubes, crocidolite asbestos, and ultrafine carbon black in mice.

Teeguarden JG, Webb-Robertson BJ, Waters KM, Murray AR, Kisin ER, Varnum SM, Jacobs JM, Pounds JG, Zanger RC, Shvedova AA. Teeguarden JG, et al. Toxicol Sci. 2011 Mar;120(1):123-35. doi: 10.1093/toxsci/kfq363. Epub 2010 Dec 6. Toxicol Sci. 2011. PMID: 21135415 Free PMC article.

4

Smoking, COPD, and 3-nitrotyrosine levels of plasma proteins.

Jin H, Webb-Robertson BJ, Peterson ES, Tan R, Bigelow DJ, Scholand MB, Hoidal JR, Pounds JG, Zangar RC. Jin H, et al. Environ Health Perspect. 2011 Sep;119(9):1314-20. doi: 10.1289/ehp.1103745. Epub 2011 Jun 6. Environ Health Perspect. 2011. PMID: 21652289 Free PMC article.

5

Proteome and computational analyses reveal new insights into the mechanisms of hepatitis C virus-mediated liver disease posttransplantation.

Diamond DL, Krasnoselsky AL, Burnum KE, Monroe ME, Webb-Robertson BJ, McDermott JE, Yeh MM, Dzib JF, Susnow N, Strom S, Proll SC, Belisle SE, Purdy DE, Rasmussen AL, Walters KA, Jacobs JM, Gritsenko MA, Camp DG, Bhattacharya R, Perkins JD, Carithers RL Jr, Liou IW, Larson AM, Benecke A, Waters KM, Smith RD, Katze MG. Diamond DL, et al. Hepatology. 2012 Jul;56(1):28-38. doi: 10.1002/hep.25649. Epub 2012 Apr 24. Hepatology. 2012. PMID: 22331615 Free PMC article.

6

Quantitative phosphoproteomics identifies filaggrin and other targets of ionizing radiation in a human skin model.

Yang F, Waters KM, Webb-Robertson BJ, Sowa MB, von Neubeck C, Aldrich JT, Markillie LM, Wirgau RM, Gritsenko MA, Zhao R, Camp DG 2nd, Smith RD, Stenoien DL. Yang F, et al. Exp Dermatol. 2012 May;21(5):352-7. doi: 10.1111/j.1600-0625.2012.01470.x. Exp Dermatol. 2012. PMID: 22509832 Free PMC article.

7

Challenges in Biomarker Discovery: Combining Expert Insights with Statistical Analysis of Complex Omics Data.

McDermott JE, Wang J, Mitchell H, Webb-Robertson BJ, Hafen R, Ramey J, Rodland KD. McDermott JE, et al. Expert Opin Med Diagn. 2013 Jan;7(1):37-51. doi: 10.1517/17530059.2012.718329. Expert Opin Med Diagn. 2013. PMID: 23335946 Free PMC article.

8

Disparate proteome responses of pathogenic and nonpathogenic aspergilli to human serum measured by activity-based protein profiling (ABPP).

Wiedner SD, Ansong C, Webb-Robertson BJ, Pederson LM, Fortuin S, Hofstad BA, Shukla AK, Panisko EA, Smith RD, Wright AT. Wiedner SD, et al. Mol Cell Proteomics. 2013 Jul;12(7):1791-805. doi: 10.1074/mcp.M112.026534. Epub 2013 Apr 18. Mol Cell Proteomics. 2013. PMID: 23599423 Free PMC article.

9

Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice.

Tchitchek N, Eisfeld AJ, Tisoncik-Go J, Josset L, Gralinski LE, Bécavin C, Tilton SC, Webb-Robertson BJ, Ferris MT, Totura AL, Li C, Neumann G, Metz TO, Smith RD, Waters KM, Baric R, Kawaoka Y, Katze MG. Tchitchek N, et al. BMC Syst Biol. 2013 Jul 29;7:69. doi: 10.1186/1752-0509-7-69. BMC Syst Biol. 2013. PMID: 23895213 Free PMC article.

10

High and low doses of ionizing radiation induce different secretome profiles in a human skin model.

Zhang Q, Matzke M, Schepmoes AA, Moore RJ, Webb-Robertson BJ, Hu Z, Monroe ME, Qian WJ, Smith RD, Morgan WF. Zhang Q, et al. PLoS One. 2014 Mar 18;9(3):e92332. doi: 10.1371/journal.pone.0092332. eCollection 2014. PLoS One. 2014. PMID: 24642900 Free PMC article.

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