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ProMEX - a mass spectral reference database for plant proteomics.
Wienkoop S, Staudinger C, Hoehenwarter W, Weckwerth W, Egelhofer V. Wienkoop S, et al. Among authors: weckwerth w. Front Plant Sci. 2012 Jun 6;3:125. doi: 10.3389/fpls.2012.00125. eCollection 2012. Front Plant Sci. 2012. PMID: 22685450 Free PMC article.
Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites.
Wolschin F, Weckwerth W. Wolschin F, et al. Among authors: weckwerth w. Plant Methods. 2005 Nov 1;1(1):9. doi: 10.1186/1746-4811-1-9. Plant Methods. 2005. PMID: 16270910 Free PMC article.
ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites.
Hummel J, Niemann M, Wienkoop S, Schulze W, Steinhauser D, Selbig J, Walther D, Weckwerth W. Hummel J, et al. Among authors: weckwerth w. BMC Bioinformatics. 2007 Jun 23;8:216. doi: 10.1186/1471-2105-8-216. BMC Bioinformatics. 2007. PMID: 17587460 Free PMC article.
Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses.
Wienkoop S, Weiss J, May P, Kempa S, Irgang S, Recuenco-Munoz L, Pietzke M, Schwemmer T, Rupprecht J, Egelhofer V, Weckwerth W. Wienkoop S, et al. Among authors: weckwerth w. Mol Biosyst. 2010 Jun;6(6):1018-31. doi: 10.1039/b920913a. Epub 2010 Mar 31. Mol Biosyst. 2010. PMID: 20358043
Functional analysis of proteins and protein species using shotgun proteomics and linear mathematics.
Hoehenwarter W, Chen Y, Recuenco-Munoz L, Wienkoop S, Weckwerth W. Hoehenwarter W, et al. Among authors: weckwerth w. Amino Acids. 2011 Jul;41(2):329-41. doi: 10.1007/s00726-010-0669-1. Epub 2010 Jul 3. Amino Acids. 2011. PMID: 20602127 Review.
Arabidopsis thaliana as a model organism for plant proteome research.
Wienkoop S, Baginsky S, Weckwerth W. Wienkoop S, et al. Among authors: weckwerth w. J Proteomics. 2010 Oct 10;73(11):2239-48. doi: 10.1016/j.jprot.2010.07.012. Epub 2010 Aug 6. J Proteomics. 2010. PMID: 20692386 Review.
MAPA distinguishes genotype-specific variability of highly similar regulatory protein isoforms in potato tuber.
Hoehenwarter W, Larhlimi A, Hummel J, Egelhofer V, Selbig J, van Dongen JT, Wienkoop S, Weckwerth W. Hoehenwarter W, et al. Among authors: weckwerth w. J Proteome Res. 2011 Jul 1;10(7):2979-91. doi: 10.1021/pr101109a. Epub 2011 May 26. J Proteome Res. 2011. PMID: 21563841
The different proteomes of Chlamydomonas reinhardtii.
Valledor L, Recuenco-Munoz L, Egelhofer V, Wienkoop S, Weckwerth W. Valledor L, et al. Among authors: weckwerth w. J Proteomics. 2012 Oct 22;75(18):5883-7. doi: 10.1016/j.jprot.2012.07.045. Epub 2012 Aug 7. J Proteomics. 2012. PMID: 22967953
Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.
Hoehenwarter W, Thomas M, Nukarinen E, Egelhofer V, Röhrig H, Weckwerth W, Conrath U, Beckers GJ. Hoehenwarter W, et al. Among authors: weckwerth w. Mol Cell Proteomics. 2013 Feb;12(2):369-80. doi: 10.1074/mcp.M112.020560. Epub 2012 Nov 20. Mol Cell Proteomics. 2013. PMID: 23172892 Free PMC article.
Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments.
Egelhofer V, Hoehenwarter W, Lyon D, Weckwerth W, Wienkoop S. Egelhofer V, et al. Among authors: weckwerth w. Nat Protoc. 2013 Mar;8(3):595-601. doi: 10.1038/nprot.2013.013. Epub 2013 Feb 28. Nat Protoc. 2013. PMID: 23449253
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