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Alignment of Next-Generation Sequencing Reads.
Reinert K, Langmead B, Weese D, Evers DJ. Reinert K, et al. Among authors: weese d. Annu Rev Genomics Hum Genet. 2015;16:133-51. doi: 10.1146/annurev-genom-090413-025358. Epub 2015 May 4. Annu Rev Genomics Hum Genet. 2015. PMID: 25939052 Review.
Fiona: a parallel and automatic strategy for read error correction.
Schulz MH, Weese D, Holtgrewe M, Dimitrova V, Niu S, Reinert K, Richard H. Schulz MH, et al. Among authors: weese d. Bioinformatics. 2014 Sep 1;30(17):i356-63. doi: 10.1093/bioinformatics/btu440. Bioinformatics. 2014. PMID: 25161220 Free PMC article.
RazerS 3: faster, fully sensitive read mapping.
Weese D, Holtgrewe M, Reinert K. Weese D, et al. Bioinformatics. 2012 Oct 15;28(20):2592-9. doi: 10.1093/bioinformatics/bts505. Epub 2012 Aug 24. Bioinformatics. 2012. PMID: 22923295
STELLAR: fast and exact local alignments.
Kehr B, Weese D, Reinert K. Kehr B, et al. Among authors: weese d. BMC Bioinformatics. 2011 Oct 5;12 Suppl 9(Suppl 9):S15. doi: 10.1186/1471-2105-12-S9-S15. BMC Bioinformatics. 2011. PMID: 22151882 Free PMC article.
MicroRazerS: rapid alignment of small RNA reads.
Emde AK, Grunert M, Weese D, Reinert K, Sperling SR. Emde AK, et al. Among authors: weese d. Bioinformatics. 2010 Jan 1;26(1):123-4. doi: 10.1093/bioinformatics/btp601. Epub 2009 Oct 29. Bioinformatics. 2010. PMID: 19880369
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