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Non-targeted Tracer Fate Detection.
Weindl D, Wegner A, Hiller K. Weindl D, et al. Methods Enzymol. 2015;561:277-302. doi: 10.1016/bs.mie.2015.04.003. Epub 2015 Jun 14. Methods Enzymol. 2015. PMID: 26358908 Review.
Loss of DJ-1 impairs antioxidant response by altered glutamine and serine metabolism.
Meiser J, Delcambre S, Wegner A, Jäger C, Ghelfi J, d'Herouel AF, Dong X, Weindl D, Stautner C, Nonnenmacher Y, Michelucci A, Popp O, Giesert F, Schildknecht S, Krämer L, Schneider JG, Woitalla D, Wurst W, Skupin A, Weisenhorn DM, Krüger R, Leist M, Hiller K. Meiser J, et al. Among authors: d herouel af, weindl d. Neurobiol Dis. 2016 May;89:112-25. doi: 10.1016/j.nbd.2016.01.019. Epub 2016 Feb 1. Neurobiol Dis. 2016. PMID: 26836693
Bridging the gap between non-targeted stable isotope labeling and metabolic flux analysis.
Weindl D, Cordes T, Battello N, Sapcariu SC, Dong X, Wegner A, Hiller K. Weindl D, et al. Cancer Metab. 2016 Apr 23;4:10. doi: 10.1186/s40170-016-0150-z. eCollection 2016. Cancer Metab. 2016. PMID: 27110360 Free PMC article.
Isotopologue ratio normalization for non-targeted metabolomics.
Weindl D, Wegner A, Jäger C, Hiller K. Weindl D, et al. J Chromatogr A. 2015 Apr 10;1389:112-9. doi: 10.1016/j.chroma.2015.02.025. Epub 2015 Feb 17. J Chromatogr A. 2015. PMID: 25748542
Fragment formula calculator (FFC): determination of chemical formulas for fragment ions in mass spectrometric data.
Wegner A, Weindl D, Jäger C, Sapcariu SC, Dong X, Stephanopoulos G, Hiller K. Wegner A, et al. Among authors: weindl d. Anal Chem. 2014 Feb 18;86(4):2221-8. doi: 10.1021/ac403879d. Epub 2014 Feb 5. Anal Chem. 2014. PMID: 24498896 Free PMC article.
NTFD--a stand-alone application for the non-targeted detection of stable isotope-labeled compounds in GC/MS data.
Hiller K, Wegner A, Weindl D, Cordes T, Metallo CM, Kelleher JK, Stephanopoulos G. Hiller K, et al. Among authors: weindl d. Bioinformatics. 2013 May 1;29(9):1226-8. doi: 10.1093/bioinformatics/btt119. Epub 2013 Mar 11. Bioinformatics. 2013. PMID: 23479350 Free PMC article.
Isotope cluster-based compound matching in gas chromatography/mass spectrometry for non-targeted metabolomics.
Wegner A, Sapcariu SC, Weindl D, Hiller K. Wegner A, et al. Among authors: weindl d. Anal Chem. 2013 Apr 16;85(8):4030-7. doi: 10.1021/ac303774z. Epub 2013 Apr 5. Anal Chem. 2013. PMID: 23514283
MIA: non-targeted mass isotopolome analysis.
Weindl D, Wegner A, Hiller K. Weindl D, et al. Bioinformatics. 2016 Sep 15;32(18):2875-6. doi: 10.1093/bioinformatics/btw317. Epub 2016 Jun 6. Bioinformatics. 2016. PMID: 27273671 Free PMC article.
How metabolites modulate metabolic flux.
Wegner A, Meiser J, Weindl D, Hiller K. Wegner A, et al. Among authors: weindl d. Curr Opin Biotechnol. 2015 Aug;34:16-22. doi: 10.1016/j.copbio.2014.11.008. Epub 2014 Nov 26. Curr Opin Biotechnol. 2015. PMID: 25461507 Review.
Benchmarking optimization methods for parameter estimation in large kinetic models.
Villaverde AF, Fröhlich F, Weindl D, Hasenauer J, Banga JR. Villaverde AF, et al. Among authors: weindl d. Bioinformatics. 2019 Mar 1;35(5):830-838. doi: 10.1093/bioinformatics/bty736. Bioinformatics. 2019. PMID: 30816929 Free PMC article.
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