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Neurospora crassa developmental control mediated by the FLB-3 transcription factor.
Boni AC, Ambrósio DL, Cupertino FB, Montenegro-Montero A, Virgilio S, Freitas FZ, Corrocher FA, Gonçalves RD, Yang A, Weirauch MT, Hughes TR, Larrondo LF, Bertolini MC. Boni AC, et al. Among authors: weirauch mt. Fungal Biol. 2018 Jun;122(6):570-582. doi: 10.1016/j.funbio.2018.01.004. Epub 2018 Mar 1. Fungal Biol. 2018. PMID: 29801802
Similarity regression predicts evolution of transcription factor sequence specificity.
Lambert SA, Yang AWH, Sasse A, Cowley G, Albu M, Caddick MX, Morris QD, Weirauch MT, Hughes TR. Lambert SA, et al. Among authors: weirauch mt. Nat Genet. 2019 Jun;51(6):981-989. doi: 10.1038/s41588-019-0411-1. Epub 2019 May 27. Nat Genet. 2019. PMID: 31133749
Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana.
Sullivan AM, Arsovski AA, Lempe J, Bubb KL, Weirauch MT, Sabo PJ, Sandstrom R, Thurman RE, Neph S, Reynolds AP, Stergachis AB, Vernot B, Johnson AK, Haugen E, Sullivan ST, Thompson A, Neri FV 3rd, Weaver M, Diegel M, Mnaimneh S, Yang A, Hughes TR, Nemhauser JL, Queitsch C, Stamatoyannopoulos JA. Sullivan AM, et al. Among authors: weirauch mt. Cell Rep. 2014 Sep 25;8(6):2015-2030. doi: 10.1016/j.celrep.2014.08.019. Epub 2014 Sep 15. Cell Rep. 2014. PMID: 25220462
The Human Transcription Factors.
Lambert SA, Jolma A, Campitelli LF, Das PK, Yin Y, Albu M, Chen X, Taipale J, Hughes TR, Weirauch MT. Lambert SA, et al. Among authors: weirauch mt. Cell. 2018 Feb 8;172(4):650-665. doi: 10.1016/j.cell.2018.01.029. Cell. 2018. PMID: 29425488 Review.
A novel C2H2 transcription factor that regulates gliA expression interdependently with GliZ in Aspergillus fumigatus.
Schoberle TJ, Nguyen-Coleman CK, Herold J, Yang A, Weirauch M, Hughes TR, McMurray JS, May GS. Schoberle TJ, et al. Among authors: weirauch m. PLoS Genet. 2014 May 1;10(5):e1004336. doi: 10.1371/journal.pgen.1004336. eCollection 2014 May. PLoS Genet. 2014. PMID: 24784729 Free PMC article.
Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network.
Reece-Hoyes JS, Pons C, Diallo A, Mori A, Shrestha S, Kadreppa S, Nelson J, Diprima S, Dricot A, Lajoie BR, Ribeiro PS, Weirauch MT, Hill DE, Hughes TR, Myers CL, Walhout AJ. Reece-Hoyes JS, et al. Among authors: weirauch mt. Mol Cell. 2013 Jul 11;51(1):116-27. doi: 10.1016/j.molcel.2013.05.018. Epub 2013 Jun 20. Mol Cell. 2013. PMID: 23791784 Free PMC article.
Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways.
Ballester B, Medina-Rivera A, Schmidt D, Gonzàlez-Porta M, Carlucci M, Chen X, Chessman K, Faure AJ, Funnell AP, Goncalves A, Kutter C, Lukk M, Menon S, McLaren WM, Stefflova K, Watt S, Weirauch MT, Crossley M, Marioni JC, Odom DT, Flicek P, Wilson MD. Ballester B, et al. Among authors: weirauch mt. Elife. 2014 Oct 3;3:e02626. doi: 10.7554/eLife.02626. Elife. 2014. PMID: 25279814 Free PMC article.
Determination and inference of eukaryotic transcription factor sequence specificity.
Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, Walhout AJM, Bouget FY, Ratsch G, Larrondo LF, Ecker JR, Hughes TR. Weirauch MT, et al. Cell. 2014 Sep 11;158(6):1431-1443. doi: 10.1016/j.cell.2014.08.009. Cell. 2014. PMID: 25215497 Free PMC article.
Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities.
Narasimhan K, Lambert SA, Yang AW, Riddell J, Mnaimneh S, Zheng H, Albu M, Najafabadi HS, Reece-Hoyes JS, Fuxman Bass JI, Walhout AJ, Weirauch MT, Hughes TR. Narasimhan K, et al. Among authors: weirauch mt. Elife. 2015 Apr 23;4:e06967. doi: 10.7554/eLife.06967. Elife. 2015. PMID: 25905672 Free PMC article.
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