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1,125 results
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PepQuery enables fast, accurate, and convenient proteomic validation of novel genomic alterations.
Wen B, Wang X, Zhang B. Wen B, et al. Genome Res. 2019 Mar;29(3):485-493. doi: 10.1101/gr.235028.118. Epub 2019 Jan 4. Genome Res. 2019. PMID: 30610011 Free PMC article.
Detection of Proteome Diversity Resulted from Alternative Splicing is Limited by Trypsin Cleavage Specificity.
Wang X, Codreanu SG, Wen B, Li K, Chambers MC, Liebler DC, Zhang B. Wang X, et al. Among authors: wen b. Mol Cell Proteomics. 2018 Mar;17(3):422-430. doi: 10.1074/mcp.RA117.000155. Epub 2017 Dec 8. Mol Cell Proteomics. 2018. PMID: 29222161 Free PMC article.
PDV: an integrative proteomics data viewer.
Li K, Vaudel M, Zhang B, Ren Y, Wen B. Li K, et al. Among authors: wen b. Bioinformatics. 2019 Apr 1;35(7):1249-1251. doi: 10.1093/bioinformatics/bty770. Bioinformatics. 2019. PMID: 30169737 Free PMC article.
Improvements to the Rice Genome Annotation Through Large-Scale Analysis of RNA-Seq and Proteomics Data Sets.
Ren Z, Qi D, Pugh N, Li K, Wen B, Zhou R, Xu S, Liu S, Jones AR. Ren Z, et al. Among authors: wen b. Mol Cell Proteomics. 2019 Jan;18(1):86-98. doi: 10.1074/mcp.RA118.000832. Epub 2018 Oct 6. Mol Cell Proteomics. 2019. PMID: 30293062 Free PMC article.
LncRNAs-directed PTEN enzymatic switch governs epithelial-mesenchymal transition.
Hu Q, Li C, Wang S, Li Y, Wen B, Zhang Y, Liang K, Yao J, Ye Y, Hsiao H, Nguyen TK, Park PK, Egranov SD, Hawke DH, Marks JR, Han L, Hung MC, Zhang B, Lin C, Yang L. Hu Q, et al. Among authors: wen b. Cell Res. 2019 Apr;29(4):286-304. doi: 10.1038/s41422-018-0134-3. Epub 2019 Jan 10. Cell Res. 2019. PMID: 30631154 Free PMC article.
Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities.
Vasaikar S, Huang C, Wang X, Petyuk VA, Savage SR, Wen B, Dou Y, Zhang Y, Shi Z, Arshad OA, Gritsenko MA, Zimmerman LJ, McDermott JE, Clauss TR, Moore RJ, Zhao R, Monroe ME, Wang YT, Chambers MC, Slebos RJC, Lau KS, Mo Q, Ding L, Ellis M, Thiagarajan M, Kinsinger CR, Rodriguez H, Smith RD, Rodland KD, Liebler DC, Liu T, Zhang B; Clinical Proteomic Tumor Analysis Consortium. Vasaikar S, et al. Among authors: wen b. Cell. 2019 May 2;177(4):1035-1049.e19. doi: 10.1016/j.cell.2019.03.030. Epub 2019 Apr 25. Cell. 2019. PMID: 31031003 Free PMC article.
Microscaled proteogenomic methods for precision oncology.
Satpathy S, Jaehnig EJ, Krug K, Kim BJ, Saltzman AB, Chan DW, Holloway KR, Anurag M, Huang C, Singh P, Gao A, Namai N, Dou Y, Wen B, Vasaikar SV, Mutch D, Watson MA, Ma C, Ademuyiwa FO, Rimawi MF, Schiff R, Hoog J, Jacobs S, Malovannaya A, Hyslop T, Clauser KR, Mani DR, Perou CM, Miles G, Zhang B, Gillette MA, Carr SA, Ellis MJ. Satpathy S, et al. Among authors: wen b. Nat Commun. 2020 Jan 27;11(1):532. doi: 10.1038/s41467-020-14381-2. Nat Commun. 2020. PMID: 31988290 Free PMC article.
Cancer neoantigen prioritization through sensitive and reliable proteogenomics analysis.
Wen B, Li K, Zhang Y, Zhang B. Wen B, et al. Nat Commun. 2020 Apr 9;11(1):1759. doi: 10.1038/s41467-020-15456-w. Nat Commun. 2020. PMID: 32273506 Free PMC article.
DeepRescore: Leveraging Deep Learning to Improve Peptide Identification in Immunopeptidomics.
Li K, Jain A, Malovannaya A, Wen B, Zhang B. Li K, et al. Among authors: wen b. Proteomics. 2020 Aug 30:e1900334. doi: 10.1002/pmic.201900334. Online ahead of print. Proteomics. 2020. PMID: 32864883
Deep learning in proteomics.
Wen B, Zeng W, Liao Y, Shi Z, Savage SR, Jiang W, Zhang B. Wen B, et al. Proteomics. 2020 Sep 16:e1900335. doi: 10.1002/pmic.201900335. Online ahead of print. Proteomics. 2020. PMID: 32939979 Review.
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