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RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences.
Wernersson R, Pedersen AG. Wernersson R, et al. Nucleic Acids Res. 2003 Jul 1;31(13):3537-9. doi: 10.1093/nar/gkg609. Nucleic Acids Res. 2003. PMID: 12824361 Free PMC article.
Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing.
Wernersson R, Schierup MH, Jørgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshøj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L. Wernersson R, et al. BMC Genomics. 2005 May 10;6:70. doi: 10.1186/1471-2164-6-70. BMC Genomics. 2005. PMID: 15885146 Free PMC article.
FeatureExtract--extraction of sequence annotation made easy.
Wernersson R. Wernersson R. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W567-9. doi: 10.1093/nar/gki388. Nucleic Acids Res. 2005. PMID: 15980537 Free PMC article.
New weakly expressed cell cycle-regulated genes in yeast.
de Lichtenberg U, Wernersson R, Jensen TS, Nielsen HB, Fausbøll A, Schmidt P, Hansen FB, Knudsen S, Brunak S. de Lichtenberg U, et al. Yeast. 2005 Nov;22(15):1191-201. doi: 10.1002/yea.1302. Yeast. 2005. PMID: 16278933
FeatureMap3D--a tool to map protein features and sequence conservation onto homologous structures in the PDB.
Wernersson R, Rapacki K, Staerfeldt HH, Sackett PW, Mølgaard A. Wernersson R, et al. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W84-8. doi: 10.1093/nar/gkl227. Nucleic Acids Res. 2006. PMID: 16845115 Free PMC article.
Improving comparability between microarray probe signals by thermodynamic intensity correction.
Bruun GM, Wernersson R, Juncker AS, Willenbrock H, Nielsen HB. Bruun GM, et al. Nucleic Acids Res. 2007;35(7):e48. doi: 10.1093/nar/gkl1098. Epub 2007 Mar 2. Nucleic Acids Res. 2007. PMID: 17337437 Free PMC article.
SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.
Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C. Panitz F, et al. Bioinformatics. 2007 Jul 1;23(13):i387-91. doi: 10.1093/bioinformatics/btm192. Bioinformatics. 2007. PMID: 17646321
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