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Dating the age of the SIV lineages that gave rise to HIV-1 and HIV-2.
Wertheim JO, Worobey M. Wertheim JO, et al. PLoS Comput Biol. 2009 May;5(5):e1000377. doi: 10.1371/journal.pcbi.1000377. Epub 2009 May 1. PLoS Comput Biol. 2009. PMID: 19412344 Free PMC article.
HIV-TRACE (TRAnsmission Cluster Engine): a Tool for Large Scale Molecular Epidemiology of HIV-1 and Other Rapidly Evolving Pathogens.
Kosakovsky Pond SL, Weaver S, Leigh Brown AJ, Wertheim JO. Kosakovsky Pond SL, et al. Mol Biol Evol. 2018 Jul 1;35(7):1812-1819. doi: 10.1093/molbev/msy016. Mol Biol Evol. 2018. PMID: 29401317 Free PMC article.
Evolutionary origins of human herpes simplex viruses 1 and 2.
Wertheim JO, Smith MD, Smith DM, Scheffler K, Kosakovsky Pond SL. Wertheim JO, et al. Mol Biol Evol. 2014 Sep;31(9):2356-64. doi: 10.1093/molbev/msu185. Epub 2014 Jun 10. Mol Biol Evol. 2014. PMID: 24916030 Free PMC article.
Evolutionary history of chimpanzees inferred from complete mitochondrial genomes.
Bjork A, Liu W, Wertheim JO, Hahn BH, Worobey M. Bjork A, et al. Mol Biol Evol. 2011 Jan;28(1):615-23. doi: 10.1093/molbev/msq227. Epub 2010 Aug 28. Mol Biol Evol. 2011. PMID: 20802239 Free PMC article.
When pigs fly: the avian origin of a 'swine flu'.
Wertheim JO. Wertheim JO. Environ Microbiol. 2009 Sep;11(9):2191-2. doi: 10.1111/j.1462-2920.2009.02039.x. Environ Microbiol. 2009. PMID: 19737300 No abstract available.
A quick fuse and the emergence of Taura syndrome virus.
Wertheim JO, Tang KF, Navarro SA, Lightner DV. Wertheim JO, et al. Virology. 2009 Aug 1;390(2):324-9. doi: 10.1016/j.virol.2009.05.010. Epub 2009 Jun 13. Virology. 2009. PMID: 19524995
Relaxed selection and the evolution of RNA virus mucin-like pathogenicity factors.
Wertheim JO, Worobey M. Wertheim JO, et al. J Virol. 2009 May;83(9):4690-4. doi: 10.1128/JVI.02358-08. Epub 2009 Feb 18. J Virol. 2009. PMID: 19224988 Free PMC article.
Assessing Host-Virus Codivergence for Close Relatives of Merkel Cell Polyomavirus Infecting African Great Apes.
Madinda NF, Ehlers B, Wertheim JO, Akoua-Koffi C, Bergl RA, Boesch C, Akonkwa DB, Eckardt W, Fruth B, Gillespie TR, Gray M, Hohmann G, Karhemere S, Kujirakwinja D, Langergraber K, Muyembe JJ, Nishuli R, Pauly M, Petrzelkova KJ, Robbins MM, Todd A, Schubert G, Stoinski TS, Wittig RM, Zuberb├╝hler K, Peeters M, Leendertz FH, Calvignac-Spencer S. Madinda NF, et al. J Virol. 2016 Sep 12;90(19):8531-41. doi: 10.1128/JVI.00247-16. Print 2016 Oct 1. J Virol. 2016. PMID: 27440885 Free PMC article.
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