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What is the significance of difference in phenotypic variability across SNP genotypes?
Sun X, Elston R, Morris N, Zhu X. Sun X, et al. Am J Hum Genet. 2013 Aug 8;93(2):390-7. doi: 10.1016/j.ajhg.2013.06.017. Epub 2013 Aug 1. Am J Hum Genet. 2013. PMID: 23910463 Free PMC article.
We studied the general problem of interpreting and detecting differences in phenotypic variability among the genotypes at a locus, from both a biological and a statistical point of view. ...Before claiming a biological interpretation for …
We studied the general problem of interpreting and detecting differences in phenotypic variability among the genotyp
The methylome of the celiac intestinal epithelium harbours genotype-independent alterations in the HLA region.
Fernandez-Jimenez N, Garcia-Etxebarria K, Plaza-Izurieta L, Romero-Garmendia I, Jauregi-Miguel A, Legarda M, Ecsedi S, Castellanos-Rubio A, Cahais V, Cuenin C, Degli Esposti D, Irastorza I, Hernandez-Vargas H, Herceg Z, Bilbao JR. Fernandez-Jimenez N, et al. Sci Rep. 2019 Feb 4;9(1):1298. doi: 10.1038/s41598-018-37746-6. Sci Rep. 2019. PMID: 30718669 Free PMC article.
We also performed Immunochip SNP genotyping of the same samples and interrogated the expression of some of the affected genes. Our analysis revealed that the epithelial methylome is characterized by the loss of CpG island (CGI) boundaries, often associated to altere …
We also performed Immunochip SNP genotyping of the same samples and interrogated the expression of some of the affected genes. …
Case-control meta-analysis of blood DNA methylation and autism spectrum disorder.
Andrews SV, Sheppard B, Windham GC, Schieve LA, Schendel DE, Croen LA, Chopra P, Alisch RS, Newschaffer CJ, Warren ST, Feinberg AP, Fallin MD, Ladd-Acosta C. Andrews SV, et al. Mol Autism. 2018 Jun 28;9:40. doi: 10.1186/s13229-018-0224-6. eCollection 2018. Mol Autism. 2018. PMID: 29988321 Free PMC article.
We performed EWAS meta-analysis across results from the two data sets, with adjustment for sex and surrogate variables that reflect major sources of biological variation and technical confounding such as cell type, batch, and ancestry. ...We also tested for e …
We performed EWAS meta-analysis across results from the two data sets, with adjustment for sex and surrogate variables that reflect m …
Signatures of polygenic adaptation associated with climate across the range of a threatened fish species with high genetic connectivity.
Harrisson KA, Amish SJ, Pavlova A, Narum SR, Telonis-Scott M, Rourke ML, Lyon J, Tonkin Z, Gilligan DM, Ingram BA, Lintermans M, Gan HM, Austin CM, Luikart G, Sunnucks P. Harrisson KA, et al. Mol Ecol. 2017 Nov;26(22):6253-6269. doi: 10.1111/mec.14368. Epub 2017 Nov 8. Mol Ecol. 2017. PMID: 28977721
Adaptive differences across species' ranges can have important implications for population persistence and conservation management decisions. ...The RDA analysis suggested that climate (temperature- and precipitation-related variables) and geography had simil …
Adaptive differences across species' ranges can have important implications for population persistence and conservation …
FTO genotype is associated with phenotypic variability of body mass index.
Yang J, Loos RJ, Powell JE, Medland SE, Speliotes EK, Chasman DI, Rose LM, Thorleifsson G, Steinthorsdottir V, Mägi R, Waite L, Smith AV, Yerges-Armstrong LM, Monda KL, Hadley D, Mahajan A, Li G, Kapur K, Vitart V, Huffman JE, Wang SR, Palmer C, Esko T, Fischer K, Zhao JH, Demirkan A, Isaacs A, Feitosa MF, Luan J, Heard-Costa NL, White C, Jackson AU, Preuss M, Ziegler A, Eriksson J, Kutalik Z, Frau F, Nolte IM, Van Vliet-Ostaptchouk JV, Hottenga JJ, Jacobs KB, Verweij N, Goel A, Medina-Gomez C, Estrada K, Bragg-Gresham JL, Sanna S, Sidore C, Tyrer J, Teumer A, Prokopenko I, Mangino M, Lindgren CM, Assimes TL, Shuldiner AR, Hui J, Beilby JP, McArdle WL, Hall P, Haritunians T, Zgaga L, Kolcic I, Polasek O, Zemunik T, Oostra BA, Junttila MJ, Grönberg H, Schreiber S, Peters A, Hicks AA, Stephens J, Foad NS, Laitinen J, Pouta A, Kaakinen M, Willemsen G, Vink JM, Wild SH, Navis G, Asselbergs FW, Homuth G, John U, Iribarren C, Harris T, Launer L, Gudnason V, O'Connell JR, Boerwinkle E, Cadby G, Palmer LJ, James AL, Musk AW, Ingelsson E, Psaty BM, Beckmann JS, Waeber G, Vollenweider P, Hayward C, Wright AF, Rudan I, Groop LC, Metspalu A, Khaw KT, van Duijn CM, Borecki IB, Province MA, Wareham NJ, Tardif JC, Huikuri HV, Cupples LA, Atwood LD, Fox CS, Boehnke M, Collins FS, Mohlke KL, Erdmann J, Schunkert H, Hengstenberg C, Stark K, Lorentzon M, Ohlsson C, Cusi D, Staessen JA, Van der Klauw MM, Pramstaller PP, Kathiresan S, Jolley JD, Ripatti S, Jarvelin MR, de Geus EJ, Boomsma DI, Penninx B, Wilson JF, Campbell H, Chanock SJ, van der Harst P, Hamsten A, Watkins H, Hofman A, Witteman JC, Zillikens MC, Uitterlinden AG, Rivadeneira F, Zillikens MC, Kiemeney LA, Vermeulen SH, Abecasis GR, Schlessinger D, Schipf S, Stumvoll M, Tönjes A, Spector TD, North KE, Lettre G, McCarthy MI, Berndt SI, Heath AC, Madden PA, Nyholt DR, Montgomery GW, Martin NG, McKnight B, Strachan DP, Hill WG, Snieder H, Ridker PM, Thorsteinsdottir U, Stefansson K, Frayling TM, Hirschhorn JN, Goddard ME, Visscher PM. Yang J, et al. Nature. 2012 Oct 11;490(7419):267-72. doi: 10.1038/nature11401. Epub 2012 Sep 16. Nature. 2012. PMID: 22982992 Free PMC article.
There is evidence across several species for genetic control of phenotypic variation of complex traits, such that the variance among phenotypes is genotype dependent. ...We report evidence that the single nucleotide polymorphism (SNP) rs7202116 …
There is evidence across several species for genetic control of phenotypic variation of complex traits, such that the v …
A Model of Compound Heterozygous, Loss-of-Function Alleles Is Broadly Consistent with Observations from Complex-Disease GWAS Datasets.
Sanjak JS, Long AD, Thornton KR. Sanjak JS, et al. PLoS Genet. 2017 Jan 19;13(1):e1006573. doi: 10.1371/journal.pgen.1006573. eCollection 2017 Jan. PLoS Genet. 2017. PMID: 28103232 Free PMC article.
Theoretical models that relate population genetic processes to the maintenance of genetic variation for quantitative traits may suggest profitable avenues for future experimental design. ...We demonstrate that the model of gene action, relating genotype to ph …
Theoretical models that relate population genetic processes to the maintenance of genetic variation for quantitative traits ma …
Exploring origins, invasion history and genetic diversity of Imperata cylindrica (L.) P. Beauv. (Cogongrass) in the United States using genotyping by sequencing.
Burrell AM, Pepper AE, Hodnett G, Goolsby JA, Overholt WA, Racelis AE, Diaz R, Klein PE. Burrell AM, et al. Mol Ecol. 2015 May;24(9):2177-93. doi: 10.1111/mec.13167. Epub 2015 Apr 13. Mol Ecol. 2015. PMID: 25864837
Each lineage was highly homogeneous, and we found no evidence of hybridization among the different lineages, despite geographical overlap. ...Thus, cogongrass presents a clear case of broad invasive success, across a diversity of environments, in a clonal organism w …
Each lineage was highly homogeneous, and we found no evidence of hybridization among the different lineages, despite geographical ove …
The Influence of Environmental Variation on the Genetic Structure of a Poison Frog Distributed Across Continuous Amazonian Rainforest.
Ferreira AS, Lima AP, Jehle R, Ferrão M, Stow A. Ferreira AS, et al. J Hered. 2020 Sep 30;111(5):457-470. doi: 10.1093/jhered/esaa034. J Hered. 2020. PMID: 32827440
Biogeographic barriers such as rivers have been shown to shape spatial patterns of biodiversity in the Amazon basin, yet relatively little is known about the distribution of genetic variation across continuous rainforest. Here, we characterize the genetic structure …
Biogeographic barriers such as rivers have been shown to shape spatial patterns of biodiversity in the Amazon basin, yet relatively little i …
Replication of genetic loci for ages at menarche and menopause in the multi-ethnic Population Architecture using Genomics and Epidemiology (PAGE) study.
Carty CL, Spencer KL, Setiawan VW, Fernandez-Rhodes L, Malinowski J, Buyske S, Young A, Jorgensen NW, Cheng I, Carlson CS, Brown-Gentry K, Goodloe R, Park A, Parikh NI, Henderson B, Le Marchand L, Wactawski-Wende J, Fornage M, Matise TC, Hindorff LA, Arnold AM, Haiman CA, Franceschini N, Peters U, Crawford DC. Carty CL, et al. Hum Reprod. 2013 Jun;28(6):1695-706. doi: 10.1093/humrep/det071. Epub 2013 Mar 18. Hum Reprod. 2013. PMID: 23508249 Free PMC article.
WIDER IMPLICATIONS OF THE FINDINGS: The discovery of genetic variants associated with the reproductive traits provides an important opportunity to elucidate the biological mechanisms involved with normal variation and disorders of menarche and menopause. In this stu …
WIDER IMPLICATIONS OF THE FINDINGS: The discovery of genetic variants associated with the reproductive traits provides an important opportun …
Haplotype structure, adaptive history and associations with exploratory behaviour of the DRD4 gene region in four great tit (Parus major) populations.
Mueller JC, Korsten P, Hermannstaedter C, Feulner T, Dingemanse NJ, Matthysen E, van Oers K, van Overveld T, Patrick SC, Quinn JL, Riemenschneider M, Tinbergen JM, Kempenaers B. Mueller JC, et al. Mol Ecol. 2013 May;22(10):2797-809. doi: 10.1111/mec.12282. Epub 2013 Mar 18. Mol Ecol. 2013. PMID: 23506506
Different adaptive histories are further hypothesized to have contributed to these population differences. Here, we genotyped 98 polymorphisms of the complete DRD4 gene including the flanking regions for 595 individuals of the four populations. We show
Different adaptive histories are further hypothesized to have contributed to these population differences. Here, we
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