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What is the significance of difference in phenotypic variability across SNP genotypes?
Sun X, Elston R, Morris N, Zhu X. Sun X, et al. Am J Hum Genet. 2013 Aug 8;93(2):390-7. doi: 10.1016/j.ajhg.2013.06.017. Epub 2013 Aug 1. Am J Hum Genet. 2013. PMID: 23910463 Free PMC article.
We studied the general problem of interpreting and detecting differences in phenotypic variability among the genotypes at a locus, from both a biological and a statistical point of view. The scales on which we measure interval-scale quantitative …
We studied the general problem of interpreting and detecting differences in phenotypic variability among the genotyp
The methylome of the celiac intestinal epithelium harbours genotype-independent alterations in the HLA region.
Fernandez-Jimenez N, Garcia-Etxebarria K, Plaza-Izurieta L, Romero-Garmendia I, Jauregi-Miguel A, Legarda M, Ecsedi S, Castellanos-Rubio A, Cahais V, Cuenin C, Degli Esposti D, Irastorza I, Hernandez-Vargas H, Herceg Z, Bilbao JR. Fernandez-Jimenez N, et al. Sci Rep. 2019 Feb 4;9(1):1298. doi: 10.1038/s41598-018-37746-6. Sci Rep. 2019. PMID: 30718669 Free PMC article.
However, the pathogenesis of CD could be driven by other layers of genomic information independent from sequence variation, such as DNA methylation, and it is possible that allele-specific methylation explains part of the SNP associations. ...We found a cell type-sp …
However, the pathogenesis of CD could be driven by other layers of genomic information independent from sequence variation, such as D …
The Influence of Environmental Variation on the Genetic Structure of a Poison Frog Distributed Across Continuous Amazonian Rainforest.
Ferreira AS, Lima AP, Jehle R, Ferrão M, Stow A. Ferreira AS, et al. J Hered. 2020 Sep 30;111(5):457-470. doi: 10.1093/jhered/esaa034. J Hered. 2020. PMID: 32827440
Biogeographic barriers such as rivers have been shown to shape spatial patterns of biodiversity in the Amazon basin, yet relatively little is known about the distribution of genetic variation across continuous rainforest. Here, we characterize the genetic structure …
Biogeographic barriers such as rivers have been shown to shape spatial patterns of biodiversity in the Amazon basin, yet relatively little i …
FTO genotype is associated with phenotypic variability of body mass index.
Yang J, Loos RJ, Powell JE, Medland SE, Speliotes EK, Chasman DI, Rose LM, Thorleifsson G, Steinthorsdottir V, Mägi R, Waite L, Smith AV, Yerges-Armstrong LM, Monda KL, Hadley D, Mahajan A, Li G, Kapur K, Vitart V, Huffman JE, Wang SR, Palmer C, Esko T, Fischer K, Zhao JH, Demirkan A, Isaacs A, Feitosa MF, Luan J, Heard-Costa NL, White C, Jackson AU, Preuss M, Ziegler A, Eriksson J, Kutalik Z, Frau F, Nolte IM, Van Vliet-Ostaptchouk JV, Hottenga JJ, Jacobs KB, Verweij N, Goel A, Medina-Gomez C, Estrada K, Bragg-Gresham JL, Sanna S, Sidore C, Tyrer J, Teumer A, Prokopenko I, Mangino M, Lindgren CM, Assimes TL, Shuldiner AR, Hui J, Beilby JP, McArdle WL, Hall P, Haritunians T, Zgaga L, Kolcic I, Polasek O, Zemunik T, Oostra BA, Junttila MJ, Grönberg H, Schreiber S, Peters A, Hicks AA, Stephens J, Foad NS, Laitinen J, Pouta A, Kaakinen M, Willemsen G, Vink JM, Wild SH, Navis G, Asselbergs FW, Homuth G, John U, Iribarren C, Harris T, Launer L, Gudnason V, O'Connell JR, Boerwinkle E, Cadby G, Palmer LJ, James AL, Musk AW, Ingelsson E, Psaty BM, Beckmann JS, Waeber G, Vollenweider P, Hayward C, Wright AF, Rudan I, Groop LC, Metspalu A, Khaw KT, van Duijn CM, Borecki IB, Province MA, Wareham NJ, Tardif JC, Huikuri HV, Cupples LA, Atwood LD, Fox CS, Boehnke M, Collins FS, Mohlke KL, Erdmann J, Schunkert H, Hengstenberg C, Stark K, Lorentzon M, Ohlsson C, Cusi D, Staessen JA, Van der Klauw MM, Pramstaller PP, Kathiresan S, Jolley JD, Ripatti S, Jarvelin MR, de Geus EJ, Boomsma DI, Penninx B, Wilson JF, Campbell H, Chanock SJ, van der Harst P, Hamsten A, Watkins H, Hofman A, Witteman JC, Zillikens MC, Uitterlinden AG, Rivadeneira F, Zillikens MC, Kiemeney LA, Vermeulen SH, Abecasis GR, Schlessinger D, Schipf S, Stumvoll M, Tönjes A, Spector TD, North KE, Lettre G, McCarthy MI, Berndt SI, Heath AC, Madden PA, Nyholt DR, Montgomery GW, Martin NG, McKnight B, Strachan DP, Hill WG, Snieder H, Ridker PM, Thorsteinsdottir U, Stefansson K, Frayling TM, Hirschhorn JN, Goddard ME, Visscher PM. Yang J, et al. Nature. 2012 Oct 11;490(7419):267-72. doi: 10.1038/nature11401. Epub 2012 Sep 16. Nature. 2012. PMID: 22982992 Free PMC article.
There is evidence across several species for genetic control of phenotypic variation of complex traits, such that the variance among phenotypes is genotype dependent. ...We report evidence that the single nucleotide polymorphism (SNP) rs7202116 …
There is evidence across several species for genetic control of phenotypic variation of complex traits, such that the v …
Case-control meta-analysis of blood DNA methylation and autism spectrum disorder.
Andrews SV, Sheppard B, Windham GC, Schieve LA, Schendel DE, Croen LA, Chopra P, Alisch RS, Newschaffer CJ, Warren ST, Feinberg AP, Fallin MD, Ladd-Acosta C. Andrews SV, et al. Mol Autism. 2018 Jun 28;9:40. doi: 10.1186/s13229-018-0224-6. eCollection 2018. Mol Autism. 2018. PMID: 29988321 Free PMC article.
The Simons Simplex Collection (SSC) provided 450K array DNAm data on an additional 343 cases and their unaffected siblings. We performed EWAS meta-analysis across results from the two data sets, with adjustment for sex and surrogate variables that reflect major sources of …
The Simons Simplex Collection (SSC) provided 450K array DNAm data on an additional 343 cases and their unaffected siblings. We performed EWA …
Signatures of polygenic adaptation associated with climate across the range of a threatened fish species with high genetic connectivity.
Harrisson KA, Amish SJ, Pavlova A, Narum SR, Telonis-Scott M, Rourke ML, Lyon J, Tonkin Z, Gilligan DM, Ingram BA, Lintermans M, Gan HM, Austin CM, Luikart G, Sunnucks P. Harrisson KA, et al. Mol Ecol. 2017 Nov;26(22):6253-6269. doi: 10.1111/mec.14368. Epub 2017 Nov 8. Mol Ecol. 2017. PMID: 28977721
Adaptive differences across species' ranges can have important implications for population persistence and conservation management decisions. ...The RDA analysis suggested that climate (temperature- and precipitation-related variables) and geography had simil …
Adaptive differences across species' ranges can have important implications for population persistence and conservation …
A Model of Compound Heterozygous, Loss-of-Function Alleles Is Broadly Consistent with Observations from Complex-Disease GWAS Datasets.
Sanjak JS, Long AD, Thornton KR. Sanjak JS, et al. PLoS Genet. 2017 Jan 19;13(1):e1006573. doi: 10.1371/journal.pgen.1006573. eCollection 2017 Jan. PLoS Genet. 2017. PMID: 28103232 Free PMC article.
A corollary is that the allelic spectrum of genetic variants contributing to complex disease risk is unknown. Theoretical models that relate population genetic processes to the maintenance of genetic variation for quantitative traits may suggest profitable avenues f …
A corollary is that the allelic spectrum of genetic variants contributing to complex disease risk is unknown. Theoretical models that relate …
Genome-wide association studies using 50 K rice genic SNP chip unveil genetic architecture for anaerobic germination of deep-water rice population of Assam, India.
Rohilla M, Singh N, Mazumder A, Sen P, Roy P, Chowdhury D, Singh NK, Mondal TK. Rohilla M, et al. Mol Genet Genomics. 2020 Sep;295(5):1211-1226. doi: 10.1007/s00438-020-01690-w. Epub 2020 Jun 6. Mol Genet Genomics. 2020. PMID: 32506235
We investigated the genome-wide association studies (GWAS) using 50 K rice genic SNP chip across 94 deep-water rice genotypes collected from different flood-prone districts/villages of Assam. Population structure and diversity analysis revealed …
We investigated the genome-wide association studies (GWAS) using 50 K rice genic SNP chip across 94 deep-water rice genotyp
Genetic Dissection Uncovers Genome-Wide Marker-Trait Associations for Plant Growth, Yield, and Yield-Related Traits Under Varying Nitrogen Levels in Nested Synthetic Wheat Introgression Libraries.
Sandhu N, Kaur A, Sethi M, Kaur S, Varinderpal-Singh, Sharma A, Bentley AR, Barsby T, Chhuneja P. Sandhu N, et al. Front Plant Sci. 2021 Oct 4;12:738710. doi: 10.3389/fpls.2021.738710. eCollection 2021. Front Plant Sci. 2021. PMID: 34671376 Free PMC article.
Significant phenotypic variation was observed across genotypes, treatments, and their interactions across seasons for all the 22 traits measured. ...Across seasons, a total of 233 marker-trait associations (MTAs) associated with fi
Significant phenotypic variation was observed across genotypes, treatments, and their interactions acr
Adaptations to climate-mediated selective pressures in sheep.
Lv FH, Agha S, Kantanen J, Colli L, Stucki S, Kijas JW, Joost S, Li MH, Ajmone Marsan P. Lv FH, et al. Mol Biol Evol. 2014 Dec;31(12):3324-43. doi: 10.1093/molbev/msu264. Epub 2014 Sep 23. Mol Biol Evol. 2014. PMID: 25249477 Free PMC article.
Climate-mediated selective pressure has shaped phenotypic variation and has left genetic "footprints" in the genome of breeds raised in different agroecological zones. Unlike numerous studies that have searched for evidence of selection using only populati
Climate-mediated selective pressure has shaped phenotypic variation and has left genetic "footprints" in the genome of breeds …
19 results