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ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins.
Wiederstein M, Sippl MJ. Wiederstein M, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W407-10. doi: 10.1093/nar/gkm290. Epub 2007 May 21. Nucleic Acids Res. 2007. PMID: 17517781 Free PMC article.
Sustained performance of knowledge-based potentials in fold recognition.
Domingues FS, Koppensteiner WA, Jaritz M, Prlic A, Weichenberger C, Wiederstein M, Floeckner H, Lackner P, Sippl MJ. Domingues FS, et al. Among authors: wiederstein m. Proteins. 1999;Suppl 3:112-20. Proteins. 1999. PMID: 10526359
Characterization of novel proteins based on known protein structures.
Koppensteiner WA, Lackner P, Wiederstein M, Sippl MJ. Koppensteiner WA, et al. Among authors: wiederstein m. J Mol Biol. 2000 Mar 3;296(4):1139-52. doi: 10.1006/jmbi.1999.3501. J Mol Biol. 2000. PMID: 10686110
Assessment of the CASP4 fold recognition category.
Sippl MJ, Lackner P, Domingues FS, Prlić A, Malik R, Andreeva A, Wiederstein M. Sippl MJ, et al. Among authors: wiederstein m. Proteins. 2001;Suppl 5:55-67. doi: 10.1002/prot.10006. Proteins. 2001. PMID: 11835482
Protein sequence randomization: efficient estimation of protein stability using knowledge-based potentials.
Wiederstein M, Sippl MJ. Wiederstein M, et al. J Mol Biol. 2005 Feb 4;345(5):1199-212. doi: 10.1016/j.jmb.2004.11.012. Epub 2004 Dec 13. J Mol Biol. 2005. PMID: 15644215
QSCOP--SCOP quantified by structural relationships.
Suhrer SJ, Wiederstein M, Sippl MJ. Suhrer SJ, et al. Among authors: wiederstein m. Bioinformatics. 2007 Feb 15;23(4):513-4. doi: 10.1093/bioinformatics/btl594. Epub 2006 Nov 24. Bioinformatics. 2007. PMID: 17127679
A note on difficult structure alignment problems.
Sippl MJ, Wiederstein M. Sippl MJ, et al. Among authors: wiederstein m. Bioinformatics. 2008 Feb 1;24(3):426-7. doi: 10.1093/bioinformatics/btm622. Epub 2008 Jan 2. Bioinformatics. 2008. PMID: 18174182
A discrete view on fold space.
Sippl MJ, Suhrer SJ, Gruber M, Wiederstein M. Sippl MJ, et al. Among authors: wiederstein m. Bioinformatics. 2008 Mar 15;24(6):870-1. doi: 10.1093/bioinformatics/btn020. Epub 2008 Jan 24. Bioinformatics. 2008. PMID: 18218654
COPS--a novel workbench for explorations in fold space.
Suhrer SJ, Wiederstein M, Gruber M, Sippl MJ. Suhrer SJ, et al. Among authors: wiederstein m. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W539-44. doi: 10.1093/nar/gkp411. Epub 2009 May 22. Nucleic Acids Res. 2009. PMID: 19465386 Free PMC article.
Effective techniques for protein structure mining.
Suhrer SJ, Gruber M, Wiederstein M, Sippl MJ. Suhrer SJ, et al. Among authors: wiederstein m. Methods Mol Biol. 2012;857:33-54. doi: 10.1007/978-1-61779-588-6_2. Methods Mol Biol. 2012. PMID: 22323216
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