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Automatically identifying gene/protein terms in MEDLINE abstracts.
Yu H, Hatzivassiloglou V, Rzhetsky A, Wilbur WJ. Yu H, et al. J Biomed Inform. 2002 Oct-Dec;35(5-6):322-30. doi: 10.1016/s1532-0464(03)00032-7. J Biomed Inform. 2002. PMID: 12968781
The value of parsing as feature generation for gene mention recognition.
Smith LH, Wilbur WJ. Smith LH, et al. J Biomed Inform. 2009 Oct;42(5):895-904. doi: 10.1016/j.jbi.2009.03.011. Epub 2009 Apr 2. J Biomed Inform. 2009. PMID: 19345281 Free PMC article.
Improving accuracy for identifying related PubMed queries by an integrated approach.
Lu Z, Wilbur WJ. Lu Z, et al. J Biomed Inform. 2009 Oct;42(5):831-8. doi: 10.1016/j.jbi.2008.12.006. Epub 2008 Dec 30. J Biomed Inform. 2009. PMID: 19162232 Free PMC article.
Generation of a large gene/protein lexicon by morphological pattern analysis.
Tanabe L, Wilbur WJ. Tanabe L, et al. J Bioinform Comput Biol. 2004 Jan;1(4):611-26. doi: 10.1142/s0219720004000399. J Bioinform Comput Biol. 2004. PMID: 15290756
Tagging gene and protein names in biomedical text.
Tanabe L, Wilbur WJ. Tanabe L, et al. Bioinformatics. 2002 Aug;18(8):1124-32. doi: 10.1093/bioinformatics/18.8.1124. Bioinformatics. 2002. PMID: 12176836
Identifying well-formed biomedical phrases in MEDLINE® text.
Kim W, Yeganova L, Comeau DC, Wilbur WJ. Kim W, et al. J Biomed Inform. 2012 Dec;45(6):1035-41. doi: 10.1016/j.jbi.2012.05.005. Epub 2012 Jun 8. J Biomed Inform. 2012. PMID: 22683889 Free PMC article.
Corpus-based statistical screening for phrase identification.
Kim W, Wilbur WJ. Kim W, et al. J Am Med Inform Assoc. 2000 Sep-Oct;7(5):499-511. doi: 10.1136/jamia.2000.0070499. J Am Med Inform Assoc. 2000. PMID: 10984469 Free PMC article.
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data.
Rzhetsky A, Iossifov I, Koike T, Krauthammer M, Kra P, Morris M, Yu H, Dubou├ę PA, Weng W, Wilbur WJ, Hatzivassiloglou V, Friedman C. Rzhetsky A, et al. J Biomed Inform. 2004 Feb;37(1):43-53. doi: 10.1016/j.jbi.2003.10.001. J Biomed Inform. 2004. PMID: 15016385
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